PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.DWZ32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 277aa MW: 30960.7 Da PI: 8.1844 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F + L H++ H Araip.DWZ32 4 HRCKLCSRTFANGRALGGHMKAH 26 79******************998 PP | |||||||
2 | zf-C2H2 | 17.4 | 1.3e-05 | 177 | 198 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +Cgk+F+++ L +H + + Araip.DWZ32 177 QCDKCGKTFRSSGALGSHRSIC 198 8*****************9876 PP | |||||||
3 | zf-C2H2 | 14.9 | 7.9e-05 | 210 | 232 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+F + L H r+H Araip.DWZ32 210 FQCPYCSKVFGSGQALGGHKRSH 232 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.5E-7 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.042 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 29 | 176 | 196 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.16E-7 | 176 | 232 | No hit | No description |
PROSITE profile | PS50157 | 8.85 | 176 | 197 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0014 | 177 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.8E-4 | 207 | 232 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.1E-12 | 210 | 232 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 210 | 232 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.221 | 210 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 212 | 232 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MERHRCKLCS RTFANGRALG GHMKAHLATL PLPPKPHQPP PQPLSFEYSS SSSSSESEHD 60 DDDDEEKDRE SETESKNKPT RTRRRSNRTR KSSIMNLTNK RTKLMSFMES PASIATEAAE 120 PVSSVSDTSP EEDLAMCLIM LSRDKWRKTS VEEEEEMKLK NKKVLRGKHH HHHHRLQCDK 180 CGKTFRSSGA LGSHRSICLC DEADGSERIF QCPYCSKVFG SGQALGGHKR SHLLPSSSSS 240 SPPSIINANL RLKQQSFIDL NLPAPPEEDD LSVLSDA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.DWZ32 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016202069.2 | 1e-134 | zinc finger protein ZAT9 | ||||
Refseq | XP_025653705.1 | 1e-134 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A444Z8R5 | 1e-132 | A0A444Z8R5_ARAHY; Uncharacterized protein | ||||
STRING | XP_007155662.1 | 7e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-34 | C2H2-like zinc finger protein |