PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.DNS1S | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YC | ||||||||
Protein Properties | Length: 144aa MW: 16662.6 Da PI: 6.2952 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.1 | 2.6e-15 | 47 | 137 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + e++ d k h +P+ ri+ i+ka++ ++s ea ++ ka e f+ +++ ++++ + +r++l +a +v++ ++fl d vp+ Araip.DNS1S 47 EEEDEGDAKSHVFPMNRIRTIVKAEDPDLRVSQEAIFVVNKAAEKFLEQFAQDGYVRCVQERRKSLSYKHLAHVVSKQRRYEFLSDFVPET 137 467889*****************98777789*********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.03E-18 | 24 | 130 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-15 | 59 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.9E-23 | 59 | 136 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MATRSTAVQK REVESVEQEE EDSTVVSNGR TDGKKPKKSK RNREEVEEED EGDAKSHVFP 60 MNRIRTIVKA EDPDLRVSQE AIFVVNKAAE KFLEQFAQDG YVRCVQERRK SLSYKHLAHV 120 VSKQRRYEFL SDFVPETMKA EDAL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.DNS1S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025685515.1 | 4e-87 | ribosomal RNA-processing protein 8 isoform X1 | ||||
TrEMBL | A0A445A9W0 | 1e-79 | A0A445A9W0_ARAHY; Uncharacterized protein | ||||
STRING | XP_007132235.1 | 2e-45 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-28 | nuclear factor Y, subunit C10 |