PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.DNI71

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 849aa MW: 93786.1 Da PI: 4.4456

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.DNI71	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Araip.DNI71 20 HVCNKCGWPFPNPHPSAKHRRAH 42 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MDSEDQRRTQ TQGNENHGVH VCNKCGWPFP NPHPSAKHRR AHKKNCGTIE GYKLLVSEGQ 60 THLNLSDDEH FSDNDHKTQA AEESPSISKS RNDIVAQTPK ILQSERNDDC NLLELQDLKT 120 DDSFALASDS NTCRSEAMSD VLLDNKIYVD GTKGTTLKEK DEIKPDRDMF EIVESSDSTI 180 GRTFEGVSGA VTEVVSLKSQ VTDGAFILKE NNGSGFPSVM PKDLFLEAES AQSMNDSIDG 240 IRVESEHMTE LATSGDIMIS REREEVNVEM LTFPSCDDRP DVAHPHIEYE CHEPVVSQNS 300 ASLHLSKALE QGHDGLKDSV NKENDFLINQ GQLSKKGDLL SQDMHSLNSN MKKQVNCELV 360 AAEMHAEECI EVFNGESNRR LHETGAFMND MKTEKNENHV VHFSEEQVSN DAHKNSQQID 420 VPKGSLMAAS DENACDASFV SATSQTTAVI IRDNTTHHEG NITSIAVDDE CRRANIENDT 480 GICMNTLQSS NVLSEINSSS ICNEYGVEMG KFEQSDIVDA QHAESGIVKD ATLPDIFEST 540 ILSEVVIDGP KGTPKDIECS NRSPLSCTHE EIKEEEINSI DRSNEYSNIV ASTSAAPHQT 600 QDEELLHKAT EGIDLIEDSN RTGRDHSLNI EPSYQCVSPV EDTQVGQHGT KVPGVVAVPI 660 QDQRDLPVQS DVQATNEAEA IASTDLSMST ETEKSNLKYP EASEEQQYEK SEMFEPPSFM 720 TLVEPGLMLG PKSAPEVETD PNKQKPDSNS SQAAWFPTLT HIANDKKSKS PISEKDSVNQ 780 KRVRVTEDNG SGLTTVNSIL GCESPAMQIM NRESTEEWNS PADITRKKKK DKSRSHWIQL 840 LCCSSVETR

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MDSEDQRRTQ TQGNENHGVH VCNKCGWPFP NPHPSAKHRR AHKKNCGTIE GYKLLVSEGQ  60
THLNLSDDEH FSDNDHKTQA AEESPSISKS RNDIVAQTPK ILQSERNDDC NLLELQDLKT  120
DDSFALASDS NTCRSEAMSD VLLDNKIYVD GTKGTTLKEK DEIKPDRDMF EIVESSDSTI  180
GRTFEGVSGA VTEVVSLKSQ VTDGAFILKE NNGSGFPSVM PKDLFLEAES AQSMNDSIDG  240
IRVESEHMTE LATSGDIMIS REREEVNVEM LTFPSCDDRP DVAHPHIEYE CHEPVVSQNS  300
ASLHLSKALE QGHDGLKDSV NKENDFLINQ GQLSKKGDLL SQDMHSLNSN MKKQVNCELV  360
AAEMHAEECI EVFNGESNRR LHETGAFMND MKTEKNENHV VHFSEEQVSN DAHKNSQQID  420
VPKGSLMAAS DENACDASFV SATSQTTAVI IRDNTTHHEG NITSIAVDDE CRRANIENDT  480
GICMNTLQSS NVLSEINSSS ICNEYGVEMG KFEQSDIVDA QHAESGIVKD ATLPDIFEST  540
ILSEVVIDGP KGTPKDIECS NRSPLSCTHE EIKEEEINSI DRSNEYSNIV ASTSAAPHQT  600
QDEELLHKAT EGIDLIEDSN RTGRDHSLNI EPSYQCVSPV EDTQVGQHGT KVPGVVAVPI  660
QDQRDLPVQS DVQATNEAEA IASTDLSMST ETEKSNLKYP EASEEQQYEK SEMFEPPSFM  720
TLVEPGLMLG PKSAPEVETD PNKQKPDSNS SQAAWFPTLT HIANDKKSKS PISEKDSVNQ  780
KRVRVTEDNG SGLTTVNSIL GCESPAMQIM NRESTEEWNS PADITRKKKK DKSRSHWIQL  840
LCCSSVETR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	825	830	RKKKKD
2	825	831	RKKKKDK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.DNI71

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016196920.1	0.0	uncharacterized protein LOC107638253 isoform X1
Refseq	XP_025645453.1	0.0	uncharacterized protein LOC112740940 isoform X1
TrEMBL	A0A444ZBP2	0.0	A0A444ZBP2_ARAHY; Uncharacterized protein
STRING	GLYMA08G11280.2	1e-139	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19