PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DEM20
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 473aa    MW: 54264.2 Da    PI: 9.6303
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DEM20genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.23.1e-191197190
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 +fY++YAk+vGF ++++ +++  +++  +++  +C++egkr+++ +     ++t++ t+ +C a++ ++++k+g w + k+ l+H+H++ 
  Araip.DEM20 11 QFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNKEGLWIILKVCLDHSHPCD 97
                 6******************************************9877...999**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-161197IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.73250286IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-5250283IPR007527Zinc finger, SWIM-type
SMARTSM005759.3E-6261288IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MCFGTIEDAN QFYQNYAKRV GFVTKIRFTR RVGKDKVPKN QMITCNREGK RKSRVSPIEK  60
TNPRTNYNCP ARISIRLNKE GLWIILKVCL DHSHPCDPEM AKLLTHNREM TMHMCRVIER  120
NDEAGVRPSK TYQVLVGEAG GISILISMKK DIVGFQFFFD NFFWAGMRST QRKQQEREAD  180
VEDYKSIIPC ATNSLIEKQF QGAYTNAKFK EVQKQFRKKA NCILHLMKAV STSKVYSILE  240
DVSTSKERVY EVNYNAETKD ITCMCQMFES RGILCRHSLV VLGHERVREI PRRYILDCWS  300
KLVKQRHSDI KSSHDPSLLN PKTERFDDLC SHSNSVAQFA SQTKETSDIL HRYLDMAMAE  360
CQNHVANSSS NANDPPYVST KGRPTNRLGS EKDKMIKKKT EAKKRKSEIT EKETLDVETT  420
SLRIINILEI VKVSLSTNSF KMLGFESDST GGSMGGFMSL LNSIHSYQFS NVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DEM20
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025608198.10.0uncharacterized protein LOC112701685
TrEMBLA0A444XQD30.0A0A444XQD3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.27e-20FAR1-related sequence 4