PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D8U3T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 406aa    MW: 43417.5 Da    PI: 7.0025
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D8U3TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.82e-661403034154
       DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst.klssaeskkel 100
                  +++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpaakrrerqqqlaa++ +++++a++   +  ++++ +++sal +t +l+s+ +++++
  Araip.D8U3T 140 TGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQLAALQDHQNRDASKRPRDGGNSNNPSTSSALVCTtRLPSTGTTTTF 237
                  6789****************************************************988877665555555555555555555443134444444433 PP

       DUF702 101 etss.............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   + +             +P+ v+s+a frcvrvs +dd +e++aYqtav+igGh+fkGiLyd+G+++
  Araip.D8U3T 238 II-HlsiyvgleleqgnFPSIVNSPAEFRCVRVSPLDDVNEQYAYQTAVNIGGHLFKGILYDYGPDS 303
                  33.1589999999****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.8E-63141302IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-27143185IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-23254301IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGGGGGGG RGSSGNHQDQ EQQHQHHSQN TEIPPPETLF WYKQNDDVST  60
YRGFELWNQH QLQQQQQQHH VIAHHHQARP LFHRDLYSSA VALGVGPSGA SDEQSPSRSA  120
VMAMRSAGVG EAGGAGSGTT GISCQDCGNQ AKKDCPHMRC RTCCKSRGYD CQTHVKSTWV  180
PAAKRRERQQ QLAALQDHQN RDASKRPRDG GNSNNPSTSS ALVCTTRLPS TGTTTTFIIH  240
LSIYVGLELE QGNFPSIVNS PAEFRCVRVS PLDDVNEQYA YQTAVNIGGH LFKGILYDYG  300
PDSENASYYG GGSGGGEGSS SAIAGAQPLN LITGTDSATT ATATAPGVSS AEALDVDPSS  360
LYNPAPINTY MAGSSGTQFF PHHPRSKEKN KKEIEKNKEK ERWCED
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D8U3T
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025687197.10.0protein SHI RELATED SEQUENCE 1 isoform X1
SwissprotQ9SD405e-78SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLV7CD601e-115V7CD60_PHAVU; Uncharacterized protein
STRINGXP_007156095.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-56Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]