PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D8IN0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 557aa    MW: 64212.4 Da    PI: 9.145
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D8IN0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.51.9e-121061514690
         FAR1  46 kktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  kk +++r+++++tr+gC a++++kk++ +g+w+v+++  eHnHe++
  Araip.D8IN0 106 KKLDRKREHKVVTRCGCLAEMRIKKKDeTGNWYVSRFIDEHNHEMV 151
                  34578999******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-10106151IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.644343391IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-4367389IPR007527Zinc finger, SWIM-type
SuperFamilySSF577567.74E-6462502IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.977481498IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEASSSVVQD AWLWSGSRKI LLTEEGDVAD DDMQDEMYDM GVEADEALVQ VEGTASGSPD  60
QLINLEGVTV DDVLQIEFST PEEASGFYNN YNRLKGRVFE RRNGWKKLDR KREHKVVTRC  120
GCLAEMRIKK KDETGNWYVS RFIDEHNHEM VSEKFVNYLR SHRKISEVEI AQLTNMRGIG  180
ISIPKIYESF AAQLGGFNKV SFTKQDMYNE IRRQRELQGG DVNAAIRFLE GVARVDGRMF  240
WRTTSRCESL HAKLGRFVES RYRVLEFVTN FQRCIDFLHD NEDELEFRSC YGTPVLQTEF  300
VELKKSGWSK FTQEMFWRFR ESLRRCVRVR IFESKVTDQC HIYRIEKYRR PDMRWIVVWE  360
PVTNNFRCTC MRMESFGLPC VHILAVCVKL DLCALPDSLV LRRWAKTAKL TIGSGEETTD  420
HAATYRSRLG AFSQICKRLR PAEPMVTSGL VRQGIKDPVR VRTKGTGRCS QAAPSVGKKR  480
RKCSTCGRLG HRRTRCPNAP SQASLRPRDD FVLNRMTQEV QGGEKAVRTK KRKIGCDPSI  540
VHQRIFSDST TCIGECS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477481KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D8IN0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206445.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025661403.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YN860.0A0A444YN86_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-18FAR1-related sequence 5