PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.D20NA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 25511.3 Da PI: 4.7038 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.3e-06 | 124 | 145 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C+k+Fs++ H+r+H Araip.D20NA 124 TCPICSKTFSSWKGAFGHMRKH 145 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEKNHSTSAS TTSLPSLSLS TPVTEPPSSP LVDQPNLSGE EEKLNILKTP EKILTDLTTN 60 NDANGGSALP PSSPPPSPPQ MMVSGAIATA VGGGAVVLGG NNIIGPIKRR KASEIMDPPS 120 GTPTCPICSK TFSSWKGAFG HMRKHPDRQY RGFFKPPTFA PSSSKAATNA SGNRHEAAGE 180 EGSSAASGEV GEGGASPAVR NLLFDLNHPV EGVKDEEEGK IILGFDLNEP AVEEEEEEKE 240 DKPF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.D20NA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016199014.1 | 1e-176 | uncharacterized protein LOC107639974 | ||||
TrEMBL | A0A444WUV3 | 1e-127 | A0A444WUV3_ARAHY; Uncharacterized protein | ||||
STRING | XP_007157993.1 | 2e-30 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35610.1 | 1e-15 | C2H2 family protein |