PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.CZ0IQ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 487aa MW: 55051.3 Da PI: 4.7947

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.CZ0IQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	123.8	2e-38	177	300	1	127
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+e L++cA+ ++++d+e +++l+++l++++s +gdp+qRl ay++e L ar+a ++s++ykal++se + e l+++++++e++P++kf+++ a Araip.CZ0IQ 177 LKEMLYTCAKSMAENDMETTDWLISELRKMVSISGDPLQRLGAYMLESLVARMACTGSKIYKALKCSEPT---GNELLSYMHVLYEICPYFKFGYMSA 271 5789***************************************************************9...99******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpa 127 N aI ea+++e++vHiiDf+isqG+Q pa Araip.CZ0IQ 272 NGAIAEAMKEESHVHIIDFQISQGTQVPA 300 ************************886 PP
2	GRAS	219.6	1.6e-67	301	487	187	374
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++le+L+++++Ea+aVn++++lh+++desv++ ++rd++L+l k+lsPkvv++veqe ++n+++Fl rf+ +l+yy a+f+s++a lpre++eri+ Araip.CZ0IQ 301 SEVQLEDLELRTNEAVAVNFAIMLHHVPDESVTSLNPRDRLLRLAKNLSPKVVTLVEQEFSTNNAQFLPRFMVTLNYYLAVFESIDAVLPREHKERIN 398 6899******************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE+++l+re+vn+vaceg+er+erhe l+kWr+r+++aGF p+pls+++++++k+ll+ ++++ y++ee++g+l+lgW+++ L++ +aWr Araip.CZ0IQ 399 VEQHCLAREVVNLVACEGEERVERHELLNKWRRRFTAAGFAPYPLSSFVNASIKTLLESYPGH-YTLEERDGTLYLGWMNQVLIVSCAWR 487 *********************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.162	151	287	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-36	177	300	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	27.486	288	468	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.6E-65	301	487	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MQTSQEHELP YGSGRFYIEP AQNPESYCFP SSENLENYSS SDNSNHATYP LVKISDPYCT 60 LESASTSNIP CQNSASTANF SPNGSPVSKL EPKSHVLRPQ HSLETTNGSP EINSCLTHDL 120 DDLRDKIREL ETAMLGPDTN TLNMYDIVVP EPEEPDSFLV AAEKWKKTME IISRGDLKEM 180 LYTCAKSMAE NDMETTDWLI SELRKMVSIS GDPLQRLGAY MLESLVARMA CTGSKIYKAL 240 KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK EESHVHIIDF QISQGTQVPA 300 SEVQLEDLEL RTNEAVAVNF AIMLHHVPDE SVTSLNPRDR LLRLAKNLSP KVVTLVEQEF 360 STNNAQFLPR FMVTLNYYLA VFESIDAVLP REHKERINVE QHCLAREVVN LVACEGEERV 420 ERHELLNKWR RRFTAAGFAP YPLSSFVNAS IKTLLESYPG HYTLEERDGT LYLGWMNQVL 480 IVSCAWR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MQTSQEHELP YGSGRFYIEP AQNPESYCFP SSENLENYSS SDNSNHATYP LVKISDPYCT  60
LESASTSNIP CQNSASTANF SPNGSPVSKL EPKSHVLRPQ HSLETTNGSP EINSCLTHDL  120
DDLRDKIREL ETAMLGPDTN TLNMYDIVVP EPEEPDSFLV AAEKWKKTME IISRGDLKEM  180
LYTCAKSMAE NDMETTDWLI SELRKMVSIS GDPLQRLGAY MLESLVARMA CTGSKIYKAL  240
KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK EESHVHIIDF QISQGTQVPA  300
SEVQLEDLEL RTNEAVAVNF AIMLHHVPDE SVTSLNPRDR LLRLAKNLSP KVVTLVEQEF  360
STNNAQFLPR FMVTLNYYLA VFESIDAVLP REHKERINVE QHCLAREVVN LVACEGEERV  420
ERHELLNKWR RRFTAAGFAP YPLSSFVNAS IKTLLESYPG HYTLEERDGT LYLGWMNQVL  480
IVSCAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-35	184	486	26	378	Protein SCARECROW
5b3h_A	4e-35	184	486	25	377	Protein SCARECROW
5b3h_D	4e-35	184	486	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.CZ0IQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020972791.1	0.0	LOW QUALITY PROTEIN: scarecrow-like protein 21
Swissprot	Q9S7H5	1e-146	SCL21_ARATH; Scarecrow-like protein 21
TrEMBL	A0A151QXN4	0.0	A0A151QXN4_CAJCA; Scarecrow-like protein 5
STRING	GLYMA02G46730.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1653	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	1e-148	SCARECROW-like 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]