PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.CV4V1

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 408aa MW: 45418.3 Da PI: 5.1255

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.CV4V1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.5	1.7e-34	206	260	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkvkgLt++hvkSHLQkYR+ Araip.CV4V1 206 KPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVKGLTIYHVKSHLQKYRT 260 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.516	203	263	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-32	204	262	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-18	204	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-25	206	260	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-10	208	259	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-20	293	337	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MSSSSPVLPT PLDNKYMKPP DSFQLSPIRE MTVNPSPLQS TSSNSNTRST GHTFSSPGVV 60 SFSSASQHER QHQPSSFVSQ TLGEDSVSSE LHSASFISQP QESDEISWGP DPFQDMLGFP 120 ENVSVQHDQV ENGACYTNDD NVKQSDFGEW VDKLMSIDDS YDPNWSQLLG DDNESEPKPK 180 PIQQQNVPSK EVKGLPSSPS TASQTKPRMR WTPELHEAFV EAVNQLGGSE KATPKGVLNL 240 MKVKGLTIYH VKSHLQKYRT ARYKPETPEG TSEKKLSSIE EMKSLDLKTS KGITEALRLQ 300 MELQKRLHEQ LEIQRKLQIQ IENQGKRLQM MFEQQREMGD SKFKDSSSSS LDEPSNSEAP 360 KEQNEKLGSG SCITKAGPGE SSWDESTKQE MADEAQVSVP PPTKRVKT

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MSSSSPVLPT PLDNKYMKPP DSFQLSPIRE MTVNPSPLQS TSSNSNTRST GHTFSSPGVV  60
SFSSASQHER QHQPSSFVSQ TLGEDSVSSE LHSASFISQP QESDEISWGP DPFQDMLGFP  120
ENVSVQHDQV ENGACYTNDD NVKQSDFGEW VDKLMSIDDS YDPNWSQLLG DDNESEPKPK  180
PIQQQNVPSK EVKGLPSSPS TASQTKPRMR WTPELHEAFV EAVNQLGGSE KATPKGVLNL  240
MKVKGLTIYH VKSHLQKYRT ARYKPETPEG TSEKKLSSIE EMKSLDLKTS KGITEALRLQ  300
MELQKRLHEQ LEIQRKLQIQ IENQGKRLQM MFEQQREMGD SKFKDSSSSS LDEPSNSEAP  360
KEQNEKLGSG SCITKAGPGE SSWDESTKQE MADEAQVSVP PPTKRVKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-30	206	264	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.CV4V1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016205391.1	0.0	protein PHR1-LIKE 1
Refseq	XP_020959766.1	0.0	protein PHR1-LIKE 1
Refseq	XP_020959767.1	0.0	protein PHR1-LIKE 1
Refseq	XP_025662726.1	0.0	protein PHR1-LIKE 1
Refseq	XP_025662727.1	0.0	protein PHR1-LIKE 1
Refseq	XP_025662728.1	0.0	protein PHR1-LIKE 1
Swissprot	Q8GUN5	7e-95	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A444YKL4	0.0	A0A444YKL4_ARAHY; Uncharacterized protein
STRING	GLYMA03G41040.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	2e-88	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]