PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.CF4LQ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 220aa MW: 25048.2 Da PI: 5.8132

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.CF4LQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.6	1.3e-35	7	102	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrr+C++dCv++pyf ++ + +fa+vhk+FGasnv++ll +lp ++r+da+ +++y+A ar++dP+yG+v+ i lqqq+++l+ e++ Araip.CF4LQ 7 SCGACKYLRRRCTRDCVFSPYFSYDEaSTHFAAVHKVFGASNVSRLLLHLPLHNRSDAAITITYQALARMHDPIYGCVAYIYLLQQQVASLQREID 102 6********************988689*************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.355	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-34	7	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MKGFGSSCGA CKYLRRRCTR DCVFSPYFSY DEASTHFAAV HKVFGASNVS RLLLHLPLHN 60 RSDAAITITY QALARMHDPI YGCVAYIYLL QQQVASLQRE IDDILGNNFM MKNSSCLGVE 120 NYCGNVHQSP MMNINNGIEY TVQEGTRSQC YKSQLANQFS SDEEIDREYE RLLLMDTDNL 180 LYGETDPISL EKFLSGIDQD VFLNHPWFKH NNNNADIIGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-35	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-35	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.CF4LQ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016192855.1	1e-167	LOB domain-containing protein 33-like
Refseq	XP_025640776.1	1e-167	LOB domain-containing protein 33-like
Swissprot	Q9LHS8	4e-53	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A444ZW74	1e-165	A0A444ZW74_ARAHY; Uncharacterized protein
STRING	GLYMA14G07260.2	1e-78	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-55	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]