PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.CF3N6

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 373aa MW: 43316.5 Da PI: 7.7655

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.CF3N6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.3e-17	57	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk+vGF +r+++++ k+ + +++ C++eg+re++ k+ + r + t +gCka++ v +++ +++w vtklel+ +H++ Araip.CF3N6 57 EFYSNYAKKVGFVTRIRNTNFDktrKELKVPINQSIHCNREGYRESRVKA---AMRVKRITTVGCKARMYVMLDRhNDNWLVTKLELKYTHAC 146 6************999887733345556689**********999...8889999*********999*************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-15	57	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MDTPIFEEAL YGSAYDMRED SNSTDVNVLC LSEDDTPHGK ESEDAIQKKD DATRAQEFYS 60 NYAKKVGFVT RIRNTNFDKT RKELKVPINQ SIHCNREGYR ESRVKAAMRV KRITTVGCKA 120 RMYVMLDRHN DNWLVTKLEL KYTHACSAEQ AVHYNLYEDR RMWVLIYFQG EFWAGMRSTQ 180 RSESMHAFFG GYLHCKSGVV QFVHEYDNVL GNKEQKELED DAADSKGVVP CSSSSTIERQ 240 FQHEYTTSKF RKVQHEFSKR GDCLVRGVTQ EDTVPSYYVI PRWSKNVQRK HTFIKSSHDE 300 KRSDESHNLF RRLCSHFYNV AQDFVTCEEE AAMLHSGLDQ LRSKLLDCRA NLVSRRVPSS 360 QNSTVTQGDP PSW

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MDTPIFEEAL YGSAYDMRED SNSTDVNVLC LSEDDTPHGK ESEDAIQKKD DATRAQEFYS  60
NYAKKVGFVT RIRNTNFDKT RKELKVPINQ SIHCNREGYR ESRVKAAMRV KRITTVGCKA  120
RMYVMLDRHN DNWLVTKLEL KYTHACSAEQ AVHYNLYEDR RMWVLIYFQG EFWAGMRSTQ  180
RSESMHAFFG GYLHCKSGVV QFVHEYDNVL GNKEQKELED DAADSKGVVP CSSSSTIERQ  240
FQHEYTTSKF RKVQHEFSKR GDCLVRGVTQ EDTVPSYYVI PRWSKNVQRK HTFIKSSHDE  300
KRSDESHNLF RRLCSHFYNV AQDFVTCEEE AAMLHSGLDQ LRSKLLDCRA NLVSRRVPSS  360
QNSTVTQGDP PSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.CF3N6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020966945.1	1e-126	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_029151815.1	1e-126	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444WP78	1e-158	A0A444WP78_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17996	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-14	far-red elongated hypocotyls 3