PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.C9I3T

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 554aa MW: 63236.1 Da PI: 8.8243

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.C9I3T	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.1e-25	85	175	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYneY++ GFs+r+ k+ k+ +ge++++t+ C++eg+r+++ + t+++r+++++tr+gC a++++k++ +gkw+v++++ eHnHe + Araip.C9I3T 85 RFYNEYGQARGFSIRQGKKIKN-SKGEFVRYTYLCNREGFRDKKWLEkTDRKREHKVVTRCGCLAEMRIKRKAeSGKWYVSRFVDEHNHEAV 175 5***************9998.7788**********999765478899999************99*************965 PP
2	FAR1	79.7	5.4e-25	289	379	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYneY++ GF +r+ k+ k+ +ge++++t+ C++eg+r+++ + ++++r ++a+tr+gC a++++k++ +gkw+v++++ eHnHe + Araip.C9I3T 289 RFYNEYGRAKGFAIRQGKKIKN-SKGEFVRYTYLCNREGFRDKKWLDkSDRKRDHKAVTRCGCLAEMRIKRKAgSGKWYVSRFVDEHNHEAV 379 5***************9998.7788**********99976646788889**************9*************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-23	85	175	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.2E-23	289	379	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MASSSRKPHD HCKGSADTAQ VGSERQELVH DEEETCLDTV IEANDFDRDN VDKCVGLADS 60 FVESEVLRAE DVLHMEFNNP EEASRFYNEY GQARGFSIRQ GKKIKNSKGE FVRYTYLCNR 120 EGFRDKKWLE KTDRKREHKV VTRCGCLAEM RIKRKAESGK WYVSRFVDEH NHEAVPARYL 180 LGPERVDVNQ TGDMTALYRT RLLRMASSSR KLHDHCKRSA DTIQVGSERQ DLVDDEEETS 240 LDTVNEADGF DGDNVDKCVR LDNGFIESEV LRAEDVLHME FNNPEEASRF YNEYGRAKGF 300 AIRQGKKIKN SKGEFVRYTY LCNREGFRDK KWLDKSDRKR DHKAVTRCGC LAEMRIKRKA 360 GSGKWYVSRF VDEHNHEAVP PRYLLGPGRV VNQTGDMTAL YRTRVDAFVH LCKRLAKAAC 420 LTDEDYKLYT DRILRDTILL EIKNGLGVEV VRGSNVNAEV AKDPIHVGTK GTGCANEASG 480 SKGTKKRKCS TWGRRGHRRT RFPNGSPSAA LPGEDAVQDR TGHRLQNGVM GQQEFVKRKR 540 TVDLLPPVSF AKFL

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MASSSRKPHD HCKGSADTAQ VGSERQELVH DEEETCLDTV IEANDFDRDN VDKCVGLADS  60
FVESEVLRAE DVLHMEFNNP EEASRFYNEY GQARGFSIRQ GKKIKNSKGE FVRYTYLCNR  120
EGFRDKKWLE KTDRKREHKV VTRCGCLAEM RIKRKAESGK WYVSRFVDEH NHEAVPARYL  180
LGPERVDVNQ TGDMTALYRT RLLRMASSSR KLHDHCKRSA DTIQVGSERQ DLVDDEEETS  240
LDTVNEADGF DGDNVDKCVR LDNGFIESEV LRAEDVLHME FNNPEEASRF YNEYGRAKGF  300
AIRQGKKIKN SKGEFVRYTY LCNREGFRDK KWLDKSDRKR DHKAVTRCGC LAEMRIKRKA  360
GSGKWYVSRF VDEHNHEAVP PRYLLGPGRV VNQTGDMTAL YRTRVDAFVH LCKRLAKAAC  420
LTDEDYKLYT DRILRDTILL EIKNGLGVEV VRGSNVNAEV AKDPIHVGTK GTGCANEASG  480
SKGTKKRKCS TWGRRGHRRT RFPNGSPSAA LPGEDAVQDR TGHRLQNGVM GQQEFVKRKR  540
TVDLLPPVSF AKFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.C9I3T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016176827.1	0.0	uncharacterized protein LOC107619118 isoform X1
Refseq	XP_020966394.1	0.0	uncharacterized protein LOC107619118 isoform X1
Refseq	XP_020966395.1	0.0	uncharacterized protein LOC107619118 isoform X1
Refseq	XP_020966396.1	0.0	uncharacterized protein LOC107619118 isoform X1
TrEMBL	A0A445BMK7	0.0	A0A445BMK7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9185	2	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	1e-20	FAR1-related sequence 12