PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.C4B0R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 263aa    MW: 29938.9 Da    PI: 8.0607
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.C4B0RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.37e-2587176290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++   g+i+++tfvC+++g+re++  +  +++r+++++tr+gC a++++kk++ +g+w+v+++  eHnHe++
  Araip.C4B0R  87 FYNNYSRLKGFASRQGKKIRN-SIGHIVRYTFVCNRQGFREKKWLEkMDRKREHKVVTRCGCLAEMRIKKKDgTGNWYVSRFIDEHNHEMV 176
                  9****************9998.6677***************997664678888999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-2287176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEASSSVVQD AWLWSGSRKI LLTEEGDVGD VDMQDGMYDM GVEADEALVQ VEGTASGSPD  60
QLINLEGVTV DDVLQMEFNT PEEASGFYNN YSRLKGFASR QGKKIRNSIG HIVRYTFVCN  120
RQGFREKKWL EKMDRKREHK VVTRCGCLAE MRIKKKDGTG NWYVSRFIDE HNHEMVSGKF  180
VNYLRSHRKI SEVEIAQLTS MRGIGISIPK IYESFAAQLG GFNKVPFTKQ DMYNEVRRQR  240
ELQGGDVNAA IRFLEGVARV YGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.C4B0R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016168962.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YN861e-137A0A444YN86_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9185237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-26FAR1-related sequence 5