PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.C0GMB

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Trihelix

Protein Properties

Length: 807aa MW: 91515.7 Da PI: 7.7981

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.C0GMB	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.6	1.8e-09	77	137	20	81
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Araip.C0GMB 77 GMSRGKTRADKDREVAEFLQRHGVSRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 137 4568999999****************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.68E-7	669	800	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MPLLSGGSGH EGSKPTSEGE QPPQQLHHQQ LRKGKYVSPV WKPNEMLWLA RAWKAQYQGG 60 GSEGSSSRTE QQQELGGMSR GKTRADKDRE VAEFLQRHGV SRDAKTAGTK WDNMLGEFRK 120 VYEWERGGER EQVGKSYFRL SPYERKLHRL PASFDEEVFE ELSQFMGSRM RSSSHGGGRG 180 VDDGRTASHA AVATVRPLPL PPPRPYKDDD LPLSARTTKQ LGGNEAFFHG PNRGSLLGLD 240 PHQHNLLDIQ GTSSSSSSRE LRRIGKIRMT WEECVSLWAE EGEVHRGRVR VQASSFLNAD 300 ELTYFDESMV PCLMESFEDG PLRGYSVDRF VSGQQVKVFG RRKSSSASSP PSSAANTTTT 360 VEFRDPSEYY MECLQQRIMS SLQQHSLPTL FELKRYLQEP PPQDLRFPLR KQVYDDLPPS 420 KDLFFTPSTH PPFLDSRTFL YDVVSPLIRS NNPTILPSSR DSFIPLWDHC INSILSFFCN 480 QDFILIRKPT HTTSTALQDQ WPNVTGFVNN YCLWRGEETD QLREGQQDPS STIVEKLLWT 540 YADLPYILGY YAIGTKVTLC ALSRSTQSDQ GETRIVRTDL QQLNLTTPTE RIKALVPCFR 600 IATLLPLLSK ICNNSKGLGI FTYSDFERFD HGNGVVTEMT PNTCTRMFSD KRKWLAAKEV 660 YEILKHRIPH AETLVQCCEN DMSLVFKPRG CRTKPSNCEE LVEALKCVTK ALVALHDLSR 720 VRVGREGEWA PEMERGLHSV KVDVWGVGWL IRTCGLVVPK MVKELERMCM ENNPEHRPTA 780 ADCYHHLLQL QSSLSHHQPP PPAAHLM

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MPLLSGGSGH EGSKPTSEGE QPPQQLHHQQ LRKGKYVSPV WKPNEMLWLA RAWKAQYQGG  60
GSEGSSSRTE QQQELGGMSR GKTRADKDRE VAEFLQRHGV SRDAKTAGTK WDNMLGEFRK  120
VYEWERGGER EQVGKSYFRL SPYERKLHRL PASFDEEVFE ELSQFMGSRM RSSSHGGGRG  180
VDDGRTASHA AVATVRPLPL PPPRPYKDDD LPLSARTTKQ LGGNEAFFHG PNRGSLLGLD  240
PHQHNLLDIQ GTSSSSSSRE LRRIGKIRMT WEECVSLWAE EGEVHRGRVR VQASSFLNAD  300
ELTYFDESMV PCLMESFEDG PLRGYSVDRF VSGQQVKVFG RRKSSSASSP PSSAANTTTT  360
VEFRDPSEYY MECLQQRIMS SLQQHSLPTL FELKRYLQEP PPQDLRFPLR KQVYDDLPPS  420
KDLFFTPSTH PPFLDSRTFL YDVVSPLIRS NNPTILPSSR DSFIPLWDHC INSILSFFCN  480
QDFILIRKPT HTTSTALQDQ WPNVTGFVNN YCLWRGEETD QLREGQQDPS STIVEKLLWT  540
YADLPYILGY YAIGTKVTLC ALSRSTQSDQ GETRIVRTDL QQLNLTTPTE RIKALVPCFR  600
IATLLPLLSK ICNNSKGLGI FTYSDFERFD HGNGVVTEMT PNTCTRMFSD KRKWLAAKEV  660
YEILKHRIPH AETLVQCCEN DMSLVFKPRG CRTKPSNCEE LVEALKCVTK ALVALHDLSR  720
VRVGREGEWA PEMERGLHSV KVDVWGVGWL IRTCGLVVPK MVKELERMCM ENNPEHRPTA  780
ADCYHHLLQL QSSLSHHQPP PPAAHLM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.C0GMB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029148870.1	0.0	uncharacterized protein LOC112749401
TrEMBL	A0A444YXZ5	0.0	A0A444YXZ5_ARAHY; Uncharacterized protein
STRING	XP_007152366.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-07	Trihelix family protein