PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.BXX66 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 182aa MW: 20622.9 Da PI: 6.5157 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.3 | 8.6e-29 | 105 | 154 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+v gL+++hvkSHLQ Araip.BXX66 105 PRLRWTPDLHLAFVQAVNRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQ 154 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 101 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.45E-13 | 103 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-20 | 105 | 154 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-8 | 106 | 154 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MGERIIEGKE GSCSLITSPN NGSRKRSFID LNEEAGDHEN RSNNNDNEIC SSSWQEGNLS 60 SSNNNNNTTS SSEEEEEEDE GGNNNKNNKG RTTSMVRQYV RSKMPRLRWT PDLHLAFVQA 120 VNRLGGQERA TPKLVLQLMN VRGLSIAHVK SHLQASSYIY IYLILFGCLD ILFIYFFIKL 180 NF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 106 | 154 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 106 | 154 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 106 | 154 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 106 | 154 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.BXX66 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169468.2 | 1e-106 | two-component response regulator ORR24 | ||||
Refseq | XP_020964558.1 | 1e-106 | two-component response regulator ORR24 | ||||
Refseq | XP_025674172.1 | 1e-106 | two-component response regulator ORR24 isoform X1 | ||||
Refseq | XP_025674173.1 | 1e-107 | putative uncharacterized protein DDB_G0286901 isoform X2 | ||||
TrEMBL | A0A444Y5T7 | 1e-100 | A0A444Y5T7_ARAHY; Uncharacterized protein | ||||
STRING | XP_004487568.1 | 2e-40 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 8e-31 | G2-like family protein |