PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BVW1D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 466aa    MW: 51242.9 Da    PI: 8.638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BVW1DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-053759123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Araip.BVW1D 37 FMCEICNKGFQRDQNLQLHRRGH 59
                 89*******************88 PP
2zf-C2H212.90.00034113135123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Araip.BVW1D 113 WKCEKCSKKYAVQSDWKAHSKTC 135
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-63659No hitNo description
Gene3DG3DSA:3.30.160.601.9E-53659IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.8E-53759IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.993759IPR007087Zinc finger, C2H2
SMARTSM003550.0313759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SMARTSM0035521078108IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4101134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.82E-6108133No hitNo description
SMARTSM00355140113133IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSNLTSASNE GNNSVSSDPD AEVIALSPKS LLATNRFMCE ICNKGFQRDQ NLQLHRRGHN  60
LPWKLKQRTS KEIRKKVYVC PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK  120
KYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQETAR TTTTTSTTTI  180
PQLHHQFNNP QIFPLKKEPL QLHHQSFNLV RTELPPWLGS SSSSSNTPTP SQNNHQGQDF  240
LNLHENNENP NPNPNPNPRL VGVGGPTIEG YPSAHMSATA LLQKAAQMGA TMSSSIGPHH  300
QSHVSVNPSA TLNHFPLNLS SRDHHHHNHN HITTTTTTTT TTTAAPSSSS SLLHDVMMMN  360
SFSSGFEAAQ FDDPFGGILV SNNNITKKDG DDNGNGNGND GNNNNNFLLH DTLPKATTTT  420
ANDRGGGRGG GAKEELTRDF LGLRPLSHSD ILNIAAMGNW KDVLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-36109173367Zinc finger protein JACKDAW
5b3h_F7e-36109173367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16375KLKQRTSKEIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BVW1D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016176182.10.0protein indeterminate-domain 7
RefseqXP_025676394.10.0protein indeterminate-domain 7
TrEMBLA0A444XDN40.0A0A444XDN4_ARAHY; Uncharacterized protein
STRINGGLYMA08G20520.21e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-92indeterminate(ID)-domain 2