PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BVD21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 483aa MW: 55262.8 Da PI: 7.2144 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.6 | 6.3e-21 | 72 | 158 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk+ GF r+s+ k+ ++++fvC ++g+r+++ + ++++r+raetr+gC a++ +++++ +g+w+v+ ++ HnH++ Araip.BVD21 72 EFYQQYAKHHGFGARRSRRKN----AAKIRQEFVCHRQGYRSPKFSLmPNRKKRPRAETRCGCPARMLLRMDNeSGRWHVAYFSDAHNHNV 158 6**************997544....46799*************98766789999*****************999***************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.3E-19 | 72 | 158 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.237 | 286 | 322 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MKIPLGACAS SDGDVVELEE SLDGAGGMSD NYADDEFYAV DSGESLGWID FLNLSEEDVL 60 RYNFADVDIA FEFYQQYAKH HGFGARRSRR KNAAKIRQEF VCHRQGYRSP KFSLMPNRKK 120 RPRAETRCGC PARMLLRMDN ESGRWHVAYF SDAHNHNVLE LRFSSMLPGH RRMSEADIEQ 180 MNDMRKGGIG SQYSYTEFLR HFHRCLMFVR AKEVEADFEC ANSDPVMTTN LKQLEQSAAE 240 NYTRAIFYLF VPILYRACSM RVVDSKDNGS YFIHTVSRYG TSGKDWRVVA TSDMREVQCT 300 CMIMECFGVP CEHIIAVLVL NNVHEIPRSL ILPRWTKDAK LVAVQSMGVI WDSVQLAQHW 360 CLMDWYQKVC KISCHSTEKF QFAREIAMLM LKHFENEDAG DTSFPPEGPP TEGGRAPARN 420 PPRRNTKGNS AHGGKKTQRC CLCREVGHNR TKCLDHRTME SSSAVADDMD SMDIDMVGWS 480 LYR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BVD21 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016178861.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
Refseq | XP_025685642.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A444X8U8 | 0.0 | A0A444X8U8_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-20 | FAR1-related sequence 5 |