PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BSZ17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 326aa MW: 35648.7 Da PI: 5.146 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.6 | 1.7e-18 | 243 | 276 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG++y++ + Araip.BSZ17 243 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 276 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.7E-81 | 28 | 319 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.6E-14 | 237 | 291 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-14 | 240 | 300 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-14 | 241 | 274 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.398 | 241 | 273 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.74E-14 | 242 | 299 | No hit | No description |
Pfam | PF00320 | 2.8E-16 | 243 | 276 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 243 | 268 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEVVVAKALK PSLRGELIFQ PPLALGDEFL CFNAVNNGGA VGEDFSVDDL LDFSEFQHGS 60 VGKGIDVSEE EEDEEDEEKD STSGSSSQDR TENDTNSNSS NAAVDSDSIF AGELSVPDDD 120 LADLEWVSHF VDDSIPELSL LYPVRSEQTR ARAQPEPKPG SAVTSLPHGV PVKPRTTRTR 180 KPNGRLLWSF GNLFSPPSSP SSCSSSVLSS TAAPLVLHGE PPAKKQKRKP EEQACGLQFQ 240 RRCSHCQVQK TPQWRTGPMG PKTLCNACGV RYKSGRLFPE YRPACSPTFS GDIHSNSHRK 300 VLEMRRRKEM SGPEPSPDRA FMLPSC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BSZ17 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186938.1 | 0.0 | GATA transcription factor 5 | ||||
Refseq | XP_025642401.1 | 0.0 | GATA transcription factor 5 | ||||
TrEMBL | A0A445A8G2 | 0.0 | A0A445A8G2_ARAHY; GATA transcription factor | ||||
STRING | GLYMA12G04180.2 | 1e-116 | (Glycine max) | ||||
STRING | AES89244 | 1e-116 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-51 | GATA transcription factor 5 |