PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BS71F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30593.8 Da    PI: 9.6014
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BS71FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-313382150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Araip.BS71F 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 82
                 79***********************************************8 PP
2K-box107.71.3e-351001973100
        K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +s+g s++e +a+++qqe+akL+ +i+nLq+ +R++lGe L+++ +k+L++Le++Le++++kiRskKnell+++i+++qk+e +l+++n+ Lr+k++e
  Araip.BS71F 100 SSNGGSTSEINAQHYQQESAKLRVQISNLQNHNRQILGEALSNMAVKDLKNLETKLERGISKIRSKKNELLFAEIDYMQKREVDLHNNNQFLRAKIAE 197
                  4555669999*************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.1322585IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-422584IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-332698IPR002100Transcription factor, MADS-box
CDDcd002657.82E-4526102No hitNo description
PRINTSPR004045.4E-332747IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PfamPF003191.0E-263481IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-334762IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-336283IPR002100Transcription factor, MADS-box
PfamPF014863.9E-26107195IPR002487Transcription factor, K-box
PROSITE profilePS5129714.091111201IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDFPNHHHQE SMSESCSQQK KNNNMGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS  60
VLCDAEVALI VFSSRGRLYE YANNSVKASI ERYKKASSDS SNGGSTSEIN AQHYQQESAK  120
LRVQISNLQN HNRQILGEAL SNMAVKDLKN LETKLERGIS KIRSKKNELL FAEIDYMQKR  180
EVDLHNNNQF LRAKIAESER NQHSNNNNNN VLSGGGTNYN NNESHHNEQH QFESRGYFQV  240
TALQPNNNEN HYAATAARQD HMSLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-212597173Myocyte-specific enhancer factor 2B
1tqe_Q2e-212597173Myocyte-specific enhancer factor 2B
1tqe_R2e-212597173Myocyte-specific enhancer factor 2B
1tqe_S2e-212597173Myocyte-specific enhancer factor 2B
6c9l_A2e-212597173Myocyte-specific enhancer factor 2B
6c9l_B2e-212597173Myocyte-specific enhancer factor 2B
6c9l_C2e-212597173Myocyte-specific enhancer factor 2B
6c9l_D2e-212597173Myocyte-specific enhancer factor 2B
6c9l_E2e-212597173Myocyte-specific enhancer factor 2B
6c9l_F2e-212597173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:19956801}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BS71F
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269|PubMed:10198637, ECO:0000269|PubMed:11058164, ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:17794879, ECO:0000269|PubMed:18281509, ECO:0000269|PubMed:19783648, ECO:0000269|PubMed:9783581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191305.10.0floral homeotic protein AGAMOUS-like isoform X2
SwissprotP178391e-118AG_ARATH; Floral homeotic protein AGAMOUS
TrEMBLA0A0S3QZ091e-132A0A0S3QZ09_PHAAN; Uncharacterized protein
TrEMBLA0A3Q0F4011e-132A0A3Q0F401_VIGRR; floral homeotic protein AGAMOUS-like isoform X2
STRINGXP_004504255.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Huang Z, et al.
    APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana.
    New Phytol., 2017. 215(3): p. 1197-1209
    [PMID:27604611]
  2. Rong XF, et al.
    Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 756-764
    [PMID:29186581]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]