PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.BR161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 195aa MW: 22313.8 Da PI: 4.7856 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.8 | 6.1e-12 | 89 | 143 | 38 | 90 |
FAR1 38 egkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +g+r+ ++ + ++++ +r++tr+gC+a++kv+ ++ +g+w+v+ ++ eHnHe+ Araip.BR161 89 YGERDAKHVHrNDRKMDPRPVTRCGCNARIKVHVDSrNGRWYVEFFSDEHNHEML 143 45555444443577888******************99***************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.0E-10 | 87 | 143 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MEGTEEVSSN FQENVTPGVD EDPIENETFV AETESVPIGA SHSDDQRDVI VLDGIGSFGT 60 IDFDALRAEE IMMIEFVDLK TAYDFYNEYG ERDAKHVHRN DRKMDPRPVT RCGCNARIKV 120 HVDSRNGRWY VEFFSDEHNH EMLEARFRGM MRSHRAIKTG DLHQINTMRS SGLRVPTIFR 180 AFANQSGGFE MVGFQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.BR161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025702767.1 | 1e-123 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445A187 | 1e-125 | A0A445A187_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-12 | FAR1-related sequence 5 |