PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.BK4FM

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 473aa MW: 53670.1 Da PI: 9.8911

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.BK4FM	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.3	5.4e-28	12	100	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s +s+++ ++++r+ vCs+eg+r++ +++ + +r+r++tr+gCka+++vkk+ gkw+++k+ ++HnH+l+p Araip.BK4FM 12 FYNAYARRIGFSTRVSVCLRSRKDSSVIRRRVVCSREGFRRNPENH--DPKRHRSVTRVGCKAQITVKKKGpLGKWYISKFIKDHNHDLVP 100 9***************************************9988..9999**************99**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-25	12	100	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.707	266	298	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.4E-9	272	297	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-6	273	300	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MEFDSELSAR AFYNAYARRI GFSTRVSVCL RSRKDSSVIR RRVVCSREGF RRNPENHDPK 60 RHRSVTRVGC KAQITVKKKG PLGKWYISKF IKDHNHDLVP PDRVHCLRSH RRVNGAARSL 120 IDTLHAAGMG AAEVMTVLIK ESGGIDNVGF TKVDCQNYMT SSSKRSLGSG NQLTLIKQYE 180 KGVADRYEKE VKEDYDTLNT APVLRTPSPM EKQAAGLYTR KIFARFQEEL VETLAYAATL 240 MDDARSQATY RVAKYGEENR AHFVRFNVFR KKASCSCQMF EFAGLVCRHI LAVFRVINIL 300 TLPSHYILKR WTRNAKSILL DKGARELQNN LEECYSSRYD SLSREIMSYV EMGAESSDTY 360 SVALNGLREA AKKVADAKKP RPAPVQSTSD NNENHESSQS SDTDQDKKIQ ELTTELEGAR 420 QRCESYRQNL FGLLKNMEEQ KLKISVKAQS VRLNLGSELV AEEIPKHIAF QGA

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MEFDSELSAR AFYNAYARRI GFSTRVSVCL RSRKDSSVIR RRVVCSREGF RRNPENHDPK  60
RHRSVTRVGC KAQITVKKKG PLGKWYISKF IKDHNHDLVP PDRVHCLRSH RRVNGAARSL  120
IDTLHAAGMG AAEVMTVLIK ESGGIDNVGF TKVDCQNYMT SSSKRSLGSG NQLTLIKQYE  180
KGVADRYEKE VKEDYDTLNT APVLRTPSPM EKQAAGLYTR KIFARFQEEL VETLAYAATL  240
MDDARSQATY RVAKYGEENR AHFVRFNVFR KKASCSCQMF EFAGLVCRHI LAVFRVINIL  300
TLPSHYILKR WTRNAKSILL DKGARELQNN LEECYSSRYD SLSREIMSYV EMGAESSDTY  360
SVALNGLREA AKKVADAKKP RPAPVQSTSD NNENHESSQS SDTDQDKKIQ ELTTELEGAR  420
QRCESYRQNL FGLLKNMEEQ KLKISVKAQS VRLNLGSELV AEEIPKHIAF QGA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.BK4FM

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179845.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_016179846.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_016179847.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_016179848.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020969656.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020969657.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_025684446.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_029151885.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	4e-86	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445B0P9	0.0	A0A445B0P9_ARAHY; Uncharacterized protein
TrEMBL	A0A445B0R7	0.0	A0A445B0R7_ARAHY; Uncharacterized protein
STRING	XP_004301609.1	1e-117	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-86	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]