PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.BFF3A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 329aa    MW: 37820.6 Da    PI: 8.8991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.BFF3AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.93e-3154158199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Araip.BFF3A  54 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsYRHRL 151
                  89***************************955567889*************************************************65577678888 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Araip.BFF3A 152 YIDWRRR 158
                  8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-4146162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-3050157IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-2552153No hitNo description
PROSITE profilePS5086314.22654157IPR003340B3 DNA binding domain
SMARTSM010199.3E-2454159IPR003340B3 DNA binding domain
PfamPF023621.1E-2854158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDLSLGTNIN HHEGVNNFQG YSSSSAAAAA TTTTTNNTNL QPPPPAPAEK EHMFDKVVTP  60
SDVGKLNRLV IPKQHAEKYF PLDSTSNEKG LLLNFEDRNG KLWRFRYSYW NSSQSYVMTK  120
GWSRFVKEKK LDAGDIVSFQ RGVGESYRHR LYIDWRRRPD NHHHHHHNLH GGLDFPSSSS  180
NFITPFFIPS QASSHYSTIR YGGRFYSLPP QSQPQPQPQP QMMMSPRHHH YYPIHHGGYG  240
GYNHPHRKRL RLFGVNMECA SSSSTATTPQ QEDHHQEQEQ EDPKCFTLFS STNSRDAEES  300
GGGEDQRRRI REQAANFFDL DPSLQFRQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-66481592114B3 domain-containing transcription factor NGA1
5os9_B1e-66481592114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.BFF3A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948137.11e-132B3 domain-containing protein Os03g0120900
RefseqXP_020990491.11e-132B3 domain-containing protein Os03g0120900
SwissprotQ8LMR92e-70Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A445AD001e-130A0A445AD00_ARAHY; Uncharacterized protein
STRINGXP_004510612.12e-83(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-67B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]