PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.BC8Z8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 21180.3 Da PI: 6.3983 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.3e-09 | 52 | 100 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 WT +E e++ +++q ++ +W+++a++++ g+t+ q+++r+qk+l Araip.BC8Z8 52 IWTRDENEQFEIVIAQCFMEaienRWEAVAARLP-GKTPAQLQERFQKLL 100 6*****************99**************.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-8 | 43 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.909 | 45 | 100 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-7 | 46 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-5 | 49 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-7 | 53 | 100 | No hit | No description |
Pfam | PF00249 | 4.5E-6 | 53 | 100 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSAKEVKNAR MSEEELDTLL MMDMEKIIEL FADDTGGNQP PQFQSPPLPR PIWTRDENEQ 60 FEIVIAQCFM EAIENRWEAV AARLPGKTPA QLQERFQKLL NDISLIQNGY LVNIHDSSII 120 NGTIPPPIYW THHHHHRTEV VEAAANKAAP MEIILSSSAM DAKSNIISHK PLSMATRKNN 180 KRKIIF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.BC8Z8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169131.2 | 1e-135 | uncharacterized protein LOC107611750 | ||||
TrEMBL | A0A444XWZ1 | 1e-134 | A0A444XWZ1_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-08 | MYB family protein |