PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.B8XSH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 220aa MW: 24207.7 Da PI: 6.6243 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.5 | 1.2e-31 | 68 | 122 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAa++Gg+a+DGCgEfmps g++gt++al+C+AC CHRnFHR+e + Araip.B8XSH 68 VRYRECLKNHAAAMGGNATDGCGEFMPS-GDHGTMEALTCSACRCHRNFHRKEIQG 122 89*************************9.889********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-24 | 68 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-28 | 68 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-29 | 69 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 70 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MELSSQEGDI PIAVNTTANY GGNGHGAHIN IHHTQNPSNG SSMHPLDNGP YNSKQEEEEE 60 EEVVVPLVRY RECLKNHAAA MGGNATDGCG EFMPSGDHGT MEALTCSACR CHRNFHRKEI 120 QGEPSAPPPP LLEYHHHHFN TATRHLAASR KFLHKNMHHH HHLGYPTAGG GNILPSRTVP 180 PAQMIMPYNI GPMPSSEHSD EQDERVKTAT RLESNAESSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.B8XSH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025614184.1 | 1e-155 | zinc-finger homeodomain protein 4 | ||||
Refseq | XP_025629669.1 | 1e-155 | zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A445AYH0 | 1e-153 | A0A445AYH0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G40190.1 | 1e-51 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-32 | homeobox protein 31 |