PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.B52UH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 156aa    MW: 17307.5 Da    PI: 4.517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.B52UHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000757441154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 rRR+ + +++++Lr++  ++       ++Ka+i   A +YI +L
  Araip.B52UH  7 RRREALQQKLNQLRDVTNSS------GVNKASIIVDASRYIEEL 44
                 799************98776......59*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-6755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-7755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.03E-594151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSRERRRE ALQQKLNQLR DVTNSSGVNK ASIIVDASRY IEELKQKVEG LNSELVIPET  60
SSSTSQIDDE LPMVTVETLE KGFHINVYSE KNCPGMLVSI LKAFEELGLD VLDARVSCED  120
TFQLQAVGGE SQKNNDTIDA QVVKQAVMQA INKSNY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.B52UH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196667.11e-111transcription factor SCREAM2-like
RefseqXP_025644994.11e-111transcription factor SCREAM2 isoform X1
TrEMBLA0A444ZKP91e-110A0A444ZKP9_ARAHY; Uncharacterized protein
STRINGGLYMA09G41470.15e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.15e-14bHLH family protein