PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.B2PYF

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 358aa MW: 40851.3 Da PI: 7.6667

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.B2PYF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5.3e-18	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.B2PYF 61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-15	61	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	310	346	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.3E-5	312	343	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0037	321	348	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MNHSTSDCQL NPGEVDYEFE SNEVPEPVYL QLMALKPLSV VDDELVPKVG MTFTTLEAAG 60 KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH 180 IWVPIYLDHY FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD 240 AADFHTVIPC ATNSSIEAQF QEAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE 300 QVSSSIFNKF VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQASQV SPRYILER

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MNHSTSDCQL NPGEVDYEFE SNEVPEPVYL QLMALKPLSV VDDELVPKVG MTFTTLEAAG  60
KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDRH  180
IWVPIYLDHY FWAGMRSTQR SESMHSFFNK YITRNSSLIQ FVKQYDNCLG SREQAERESD  240
AADFHTVIPC ATNSSIEAQF QEAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE  300
QVSSSIFNKF VVTYDSVAAE VKCQCLLFES RGILCRHALS VLSFEQASQV SPRYILER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.B2PYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020985790.1	1e-130	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-31	far-red elongated hypocotyls 3