PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ATR02
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 293aa    MW: 33105 Da    PI: 10.509
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ATR02genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-31106155150
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                  krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Araip.ATR02 106 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 155
                  79***********************************************8 PP
2K-box106.14.3e-351762679100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + +a + + qqe++kL+++i+nLq+++R++lGe+L+s+++++L++Le +Lek+++kiRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  Araip.ATR02 176 AGSASEINAQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLEGKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 267
                  556667799********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.13298158IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-4298157IPR002100Transcription factor, MADS-box
CDDcd002651.40E-4299168No hitNo description
SuperFamilySSF554554.71E-3399170IPR002100Transcription factor, MADS-box
PROSITE patternPS003500100154IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-33100120IPR002100Transcription factor, MADS-box
PfamPF003191.2E-26107154IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-33120135IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-33135156IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.415181271IPR002487Transcription factor, K-box
PfamPF014861.6E-26182265IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
SEIIYIKLSP SSSSSKNKQA KKDQSQKKIK GKSSEPLLCL NLFFPNTNTI WKLIKTRKFF  60
FILLRRFCGV VGIGEIKKMA FPGANESMSG ASSPQRKMGR GKIEIKRIEN TTNRQVTFCK  120
RRNGLLKKAY ELSVLCDAEV ALIVFSSRGR LYEYANNSVK ATIDRYKKAC SDSSGAGSAS  180
EINAQQEAEK LRAQISNLQN NNRQILGESL SSMNVRDLKN LEGKLEKGIS KIRSKKNELL  240
FAEIEYMQKR EIDLHNNNQL LRAKIAESER NNMSVLPTTG PTNYDSMHQS HEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2098166169Myocyte-specific enhancer factor 2B
1tqe_Q1e-2098166169Myocyte-specific enhancer factor 2B
1tqe_R1e-2098166169Myocyte-specific enhancer factor 2B
1tqe_S1e-2098166169Myocyte-specific enhancer factor 2B
6c9l_A1e-2098166169Myocyte-specific enhancer factor 2B
6c9l_B1e-2098166169Myocyte-specific enhancer factor 2B
6c9l_C1e-2098166169Myocyte-specific enhancer factor 2B
6c9l_D1e-2098166169Myocyte-specific enhancer factor 2B
6c9l_E1e-2098166169Myocyte-specific enhancer factor 2B
6c9l_F1e-2098166169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ATR02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7605791e-167KT760579.1 Thermopsis turcica floral homeotic protein AGAMOUS mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025621759.11e-148floral homeotic protein AGAMOUS
SwissprotQ408851e-109AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A445BC771e-140A0A445BC77_ARAHY; Uncharacterized protein
STRINGXP_004485952.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.17e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]