PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AS7FB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 241aa    MW: 26620.9 Da    PI: 4.6344
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AS7FBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.51e-06444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  C+ +e+ +++  C  ++  lC++C +e H        H++
  Araip.AS7FB  4 QCDVCEKAQATVICCADEAALCAKCDVEVHAAnklarkHQR 44
                 7******99*********************65667777765 PP
2zf-B_box30.86e-105394237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 + ++C+ +++k++ +fC +++ l+C+dC + +H+       H
  Araip.AS7FB 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAgslsanH 94
                 789******************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.556147IPR000315B-box-type zinc finger
CDDcd000211.97E-6347No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445299IPR000315B-box-type zinc finger
SMARTSM003364.6E-155299IPR000315B-box-type zinc finger
PfamPF006437.0E-95395IPR000315B-box-type zinc finger
CDDcd000216.76E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKIQCDVCEK AQATVICCAD EAALCAKCDV EVHAANKLAR KHQRLLLQCL SNKLPRCDIC  60
QDKPAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIQVALSSSS NCNKGNEKSH  120
LEPPNRNNAQ QVSMEVPPQQ VPNFSSSSWG VDDLLELSAF ESPEKGVVQK ESMQFGELEW  180
IEDVGLFGEQ FPHEALAAAE VPQLTSNNAA SFRTTSKSYM SHKKPRIEDD DDEFFTVPDL  240
G
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AS7FB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935501.11e-179B-box zinc finger protein 25
RefseqXP_016170403.11e-179B-box zinc finger protein 25
RefseqXP_025613766.11e-179B-box zinc finger protein 25
RefseqXP_025673348.11e-179B-box zinc finger protein 25
RefseqXP_029144232.11e-179B-box zinc finger protein 25
SwissprotQ9SID17e-87BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A444Y8G51e-178A0A444Y8G5_ARAHY; Uncharacterized protein
STRINGGLYMA13G41980.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.13e-89salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]