PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.AEV9M | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 366aa MW: 42980.3 Da PI: 8.7559 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.1 | 1.2e-17 | 41 | 127 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs+++++++++ ++ei+++ +Cs+egkr+++ + + +t+++ ++C a++ v k g w ++k++l+H+H+++p Araip.AEV9M 41 KFYKDYSKLAGFSTKIRNTTRK--EDEIKNKLITCSREGKRKSKISP---TLKTNSSAGINCPARIYVYILKdVGLWIISKVVLNHSHHCCP 127 6****************98776..888***************99877...999***************988779**************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.4E-15 | 41 | 127 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 8.407 | 236 | 286 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0029 | 261 | 288 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEWNAITKSD VVDEYNFRCI VDEQFVPKVG MTFKTLEEAR KFYKDYSKLA GFSTKIRNTT 60 RKEDEIKNKL ITCSREGKRK SKISPTLKTN SSAGINCPAR IYVYILKDVG LWIISKVVLN 120 HSHHCCPNRA EMLKQHRELS MFVCRTIENN EEAGIRPKLF EDRHLWILEA NSKEREREFD 180 AADFYTVILC ATKSPIETQF QYVYTHEKFR EVQVQFREKV NCITRSMNST LGFMAYEVVE 240 QVSNSTFNKF IFTYDTISRE VKCQCLLFES RGILCRHSLR ALGFERVEKV APKYILEHWS 300 KNVKRRHTHI KSSQDEPLLE PRSKRFDDLV FQSHNICEFV SEFKELTGIL HRTFDNSNLL 360 DGGSMI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.AEV9M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015960283.1 | 1e-136 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A445AZE3 | 0.0 | A0A445AZE3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 1e-14 | far-red elongated hypocotyls 3 |