PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ABD3X
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 489aa    MW: 55133.5 Da    PI: 8.3356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ABD3XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0583105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Araip.ABD3X  83 FVCEICNKGFQRDQNLQLHRRGH 105
                  89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.99E-782105No hitNo description
PfamPF121717.8E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355140125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.99E-7155180No hitNo description
SMARTSM00355150160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MMSEEPFSSV LPPNTTITST LVHLQDPTSN PSSNNSKPNS NQPTKKRRNL PGTPGNYYIC  60
FDTDPDAEVI AMSPKSLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKEEQV  120
RKKVYVCPEK SCVHHDPCRA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA VHSDWKAHAK  180
ICGTREYKKD SFITHRAFCD ALAEEGARIS SVPTTLSNLM GRRDHNHHHH HHHHQLATSR  240
IIPRHHILPS AGFHSEFGGG GGGYYSDQKL MMMRNNNINN NNNIQIPLWL DQGNSNNNHN  300
HVSGISSNTS SACTNGNTII MPHHDVVNNS MFGSQQWQQN PEASSSSLTN NNNNANVAMM  360
MPPPHAGLKQ EQDDMFYFGA SNYHHHHHIM LQKASQIGGG DELVNLEGSI SSSNMIIPPL  420
ILNPRRPSKN DNKDEDDELG LTRDFLGVGE DESTMSNTRP LMLQQHLADF TAMDMHHQTH  480
YSSSSGHYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-27156212368Zinc finger protein JACKDAW
5b3h_F8e-27156212368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111122KQRNKEEQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ABD3X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187398.20.0protein indeterminate-domain 9
TrEMBLA0A445A9V60.0A0A445A9V6_ARAHY; Uncharacterized protein
STRINGGLYMA11G15950.21e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.15e-85C2H2-like zinc finger protein