PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AB6K1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 847aa    MW: 92739.1 Da    PI: 6.3331
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AB6K1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.2e-182280357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Araip.AB6K1 22 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80
                 5679*****************************************************97 PP
2START172.92.1e-541683762205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g+++l +++
  Araip.AB6K1 168 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWYRDCRTVDVLNVMSTGngGTIELLYMQ 264
                  7899******************************************************.9999999999***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p     +++vRa + pSg+li+p+++g+s +++v+h+ l+ ++++++lr+l++s++  
  Araip.AB6K1 265 LYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAmpaVQHFVRADMMPSGYLIRPCEGGGSIIHIVDHMILEPWSVPEVLRPLYESSMLL 362
                  *****************************************999999*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  +++t++a+l+++++
  Araip.AB6K1 363 AQRTTMAALRHLRQ 376
                  *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3051781IPR001356Homeobox domain
SMARTSM003894.0E-151985IPR001356Homeobox domain
CDDcd000866.78E-162282No hitNo description
SuperFamilySSF466891.71E-162285IPR009057Homeodomain-like
PfamPF000463.1E-162380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-182480IPR009057Homeodomain-like
CDDcd146861.16E-674113No hitNo description
PROSITE profilePS5084823.672158386IPR002913START domain
CDDcd088751.69E-75162377No hitNo description
SuperFamilySSF559617.55E-34167378No hitNo description
SMARTSM002343.6E-39167377IPR002913START domain
Gene3DG3DSA:3.30.530.205.5E-19167373IPR023393START-like domain
PfamPF018521.3E-51168376IPR002913START domain
PfamPF086701.5E-50706846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MMAVSSGSKE GGGSKVLMDN GKYVRYTPEQ VEALERLYHE CPKPSSLRRQ QLIRDCPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQAV NRKLTAMNKL LMEENDRLQK QVSHLVYENT  120
FFRQHTQQNQ AALATTDTSC ESVVTSGQRN LTPQHPPRDA SPAGLLSIAE ETLAEFLSKA  180
TGTAVEWVQM PGMKPGPDSI GIVAISHGCP GVAARACGLV GLEPARVAEI LKDRLSWYRD  240
CRTVDVLNVM STGNGGTIEL LYMQLYAPTT LAPGRDFWLL RYTSLLEDGS LVVCERSLNN  300
TQNGPAMPAV QHFVRADMMP SGYLIRPCEG GGSIIHIVDH MILEPWSVPE VLRPLYESSM  360
LLAQRTTMAA LRHLRQISQE VSQPSVTGWG RRPAALRALS QRLSKGFNEA VNGFTDDGWS  420
LLESDGIDDV TLLVNSSPSK MMGANLGYNG GGFASVTSSV LCAKASMLLQ NVPPAILLRF  480
LREHRSEWAD SSIDAYSAAA IKAGPCNLPG VRAGGFGGQV ILPLAHTIEH EEFMEVIKLE  540
NMGYYRDDMT IPGDVFLLQL CSGVDENAVG TSAELIFAPI DASFSDDAPI LPSGFRIIPL  600
DSTSASLDAA SPNRTLDLAS ALEVGTAGSK AGGENSSHSG STKSVMTIAF QFAFEVHLQD  660
NIATMARQYV RSIIASVQRV SLALSPSRFG SQNAFHLPPG TPEAQTLARW ISSSYRFYLG  720
VELLKSEGSE PILKSLWHHT DAVLCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI  780
FDDNGKKTLC SEFPQIMQQG FMCIQGGICL SSMGRPVSYE RAVAWKVLNE EETAHCICFM  840
FINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.AB6K1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016180268.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_025681305.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A445B4N90.0A0A445B4N9_ARAHY; Uncharacterized protein
STRINGGLYMA06G09100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]