PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.A9IXU

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Trihelix

Protein Properties

Length: 426aa MW: 47858.1 Da PI: 6.0993

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.A9IXU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.1	2.2e-13	4	49	40	87
trihelix 40 ergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 e g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea Araip.A9IXU 4 EFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 49 679**************************8..55667*****85 PP
2	trihelix	35.1	3.6e-11	302	393	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 rW++ e+ Li++r+ eer+r+++ Wee+s k+ gfers+++Ck+ w++++ ++++++ Araip.A9IXU 302 RWSEMEISNLIQLRTGFEERMRENNnnnnggggyyfesnnnnnnnnGVSSVWEEISGKLGCLGFERSSEECKQIWDEISISLGRTNTSAAAA 393 8*******************98777888899999999999887777899************************998888777776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-8	4	50	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MAEEFGYQRS GKKCKEKFEN LYKYYKKTKE GKASRQDGKH YRFFRQLEAI CGGGGGSGGS 60 GGDSSNTTHN NNLHALASNT ASASVAGANV QTPISFNNGD HHNNNSLIKC SESLSFSNSC 120 ELETSSSENN DEDLSAIAYM MKHSTSSRDN NNNKQKGVQL DDDHHGGRVR RRRSLRAKVE 180 EIVGSHMRKI IETQDAWMER MVSVVEQREK EMASMEEERK KKESMRFDQE VTELWAKERA 240 WVEARDAALI EVVRKHIGNG NNNINNNKEF EIIEALAPQS NNKNNKGQTA NNNNNNGGGG 300 GRWSEMEISN LIQLRTGFEE RMRENNNNNN GGGGYYFESN NNNNNNNGVS SVWEEISGKL 360 GCLGFERSSE ECKQIWDEIS ISLGRTNTSA AAAVAKTNRP WCLELKLTDD DDDDDEHHHD 420 HDDHHI

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MAEEFGYQRS GKKCKEKFEN LYKYYKKTKE GKASRQDGKH YRFFRQLEAI CGGGGGSGGS  60
GGDSSNTTHN NNLHALASNT ASASVAGANV QTPISFNNGD HHNNNSLIKC SESLSFSNSC  120
ELETSSSENN DEDLSAIAYM MKHSTSSRDN NNNKQKGVQL DDDHHGGRVR RRRSLRAKVE  180
EIVGSHMRKI IETQDAWMER MVSVVEQREK EMASMEEERK KKESMRFDQE VTELWAKERA  240
WVEARDAALI EVVRKHIGNG NNNINNNKEF EIIEALAPQS NNKNNKGQTA NNNNNNGGGG  300
GRWSEMEISN LIQLRTGFEE RMRENNNNNN GGGGYYFESN NNNNNNNGVS SVWEEISGKL  360
GCLGFERSSE ECKQIWDEIS ISLGRTNTSA AAAVAKTNRP WCLELKLTDD DDDDDEHHHD  420
HDDHHI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.A9IXU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	7e-54	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016174277.1	0.0	trihelix transcription factor PTL-like
Refseq	XP_025679986.1	0.0	trihelix transcription factor PTL-like
TrEMBL	A0A444XSK9	0.0	A0A444XSK9_ARAHY; Uncharacterized protein
STRING	GLYMA20G32940.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-36	Trihelix family protein