PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A7P4U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 305aa    MW: 33368.1 Da    PI: 5.6128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A7P4UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029114136123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C++ Fs++  L  H++ H
  Araip.A7P4U 114 FSCNFCKREFSSSQALGGHQNAH 136
                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-6111141No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4112140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAAQSSDACP SESSSISATF QGIDNNTRDN DLASEPDQAS NSNNNMERML DFVKLSNNDV  60
SSIRCSSNVK ELDFFNTGKR VMGSSSTWTN NNNVDEGKDE NTEEKERTSE PKTFSCNFCK  120
REFSSSQALG GHQNAHKQER AIAKRRQGMD TGAFGHPHFP YYPYHSFFTP SLYGSYNRTL  180
GVRVESMIHK PSYPWSAGLR FGRNHNWSTQ RILGSSSSLA LDRLSIEGLQ PNNEVGGVSG  240
IQASSSNLRK EDDNGGNGNT SQLGDSSTNN VATSLTCHAK DDQDPKPDNE PSSSESPGLD  300
LSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A7P4U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973330.10.0zinc finger protein 4-like
TrEMBLA0A445ABC30.0A0A445ABC3_ARAHY; Uncharacterized protein
STRINGGLYMA06G46860.25e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.18e-25C2H2 family protein