PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A7EFG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 406aa    MW: 46285.7 Da    PI: 9.0878
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A7EFGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-13112201390
                  EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  k+lt++dv +  r+++p +fa+     gg+ e+ k ++ e++   s+e+++  +k+++r y ++  Wk+Fvk ++Lk++D++vF++++++++
  Araip.A7EFG 112 KILTNHDVKAD-RVYIPYQFAKLLlesGGS-ETWKSVVEESKITTSFEMNVLKSKGKEReYKIGPKWKDFVKMHKLKTRDSCVFEMVSKEDQ 201
                  78877777765.6********666997444.34456887888889999999775555556*************************8876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.698109209IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-11109200IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-5110209IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-11110206IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-8111203No hitNo description
PfamPF023622.6E-12112201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVRICLMYVT SGIFFMAHLD KRNNPIYMDL YESHYVKDII GMSLLKVIHD KLGLNYFDVL  60
DDVASGIEDN GMHENMKNPG VQRIVKNNSK ASTVQNRSMK KKRGYVILYH CKILTNHDVK  120
ADRVYIPYQF AKLLLESGGS ETWKSVVEES KITTSFEMNV LKSKGKEREY KIGPKWKDFV  180
KMHKLKTRDS CVFEMVSKED QLIRNFKSSP VVVRHQTPPE IMMKICGVGE RRQGGSRSVL  240
STWVGKLDLS IVVDRGAEEE RSNSMIRSSG RLFRRELEHA QHLGGESRLI VCLDEDEFID  300
VDLKASGKLQ LLNSMLMELK AKNLRGLGVR IVTRYEKAKS SMVSMVKYPD PQRCRLHFSL  360
PFLLQSSSPT SIELLFPVAS GCVPLTTSST LFDLYEYIGD DVDCGD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A7EFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020995282.11e-112uncharacterized protein LOC110279727