PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.A5C77 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 282aa MW: 32377.1 Da PI: 9.933 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.3 | 1.2e-33 | 19 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+++ ++d+++++++sws++g sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++ll++i+ Araip.A5C77 19 FLTKTFDAVDDPATDHVVSWSRSGASFVVWDPHAFSRGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFVRGHRHLLTSIR 106 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Araip.A5C77 107 RRKA 110 *985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.0E-37 | 12 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.6E-59 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-34 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.5E-20 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.8E-31 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-20 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MVPPPQPMEG LHEAGPPPFL TKTFDAVDDP ATDHVVSWSR SGASFVVWDP HAFSRGLLPR 60 YFKHNNFSSF VRQLNTYGFR KIDPDKWEFA NEGFVRGHRH LLTSIRRRKA PPPPIQTQTS 120 QSQQGHCLEV GRFGLDEEID RLRRDKQVLM LELVRLRQQQ QTTRSYLQAM EQRLQGTEIK 180 QQQMMAFLAK AMKNPVFIQQ LIQHKEKRKE LEDAMTKKRR RPIEQGPSCS ATTVKVENPP 240 EFAGYAGGFG ASELQILAME MQGYGVDWNK DSVVVIAMIE KM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-25 | 14 | 108 | 12 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 206 | 220 | KRKELEDAMTKKRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.A5C77 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025657834.1 | 0.0 | heat stress transcription factor A-7a | ||||
Swissprot | Q6VBB2 | 1e-113 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
Swissprot | Q9LUH8 | 1e-113 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A4P1RI18 | 1e-149 | A0A4P1RI18_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA19G34210.1 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22830.1 | 6e-99 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
---|---|---|---|
|