PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A33GC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 399aa    MW: 44200.7 Da    PI: 4.98
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A33GCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-051043336
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 e+ C+ ++  +++ +C++++  lC dC ++ H+ 
  Araip.A33GC 10 ETLCECCGVARAIVYCKSDSARLCMDCDVSVHSA 43
                 688******99*********************54 PP
2CCT54.25.1e-19343386144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Re+a+lR +eK+k+ +F K+irYesRKa+A+sR+RvKGrFvk+ 
  Araip.A33GC 343 REKAKLRLNEKKKNLRFGKQIRYESRKARADSRKRVKGRFVKAG 386
                  99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-5855IPR000315B-box-type zinc finger
PROSITE profilePS501199.229855IPR000315B-box-type zinc finger
CDDcd000216.27E-51143No hitNo description
PfamPF062034.1E-14343385IPR010402CCT domain
PROSITE profilePS5101713.552343385IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MRFERIMEFE TLCECCGVAR AIVYCKSDSA RLCMDCDVSV HSANCLSMRH LRSLLCDRCN  60
SEAAIVHCIE EKLSFCQGCC ELNQNGCSIL GHRLQSLNCY KGCPNFTDLP GLFSFVLDDY  120
SCSSGLDHNG GGSGSIDTSL PRSESCNSKC LEQLVNTINN DGNFGFVNEK VNGILWIAST  180
RIMREVECPN LNNLGIHDGD GLNMDNFQFN FENTDEIFDY SQIDTTYQLV NGGMDRELMG  240
NNISATESNA LFESTIEAGG SASEMYGINS NENCVLMPPS CNENSNLGFS KGSQLYSSMS  300
LPLPNGESEI GATDYQDSGL SSMFPMGDLS MEPISKGTCQ QAREKAKLRL NEKKKNLRFG  360
KQIRYESRKA RADSRKRVKG RFVKAGEAYD YDPKKTRSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A33GC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993415.10.0putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_020993417.10.0putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_020993418.10.0putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A445A5S00.0A0A445A5S0_ARAHY; Uncharacterized protein
STRINGGLYMA12G32221.21e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.12e-64B-box type zinc finger protein with CCT domain