PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.A250V
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 415aa    MW: 47446.5 Da    PI: 6.518
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.A250VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-21112231186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.................................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                  +Wt  +v++Li a+ +++++++ g                                   kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++
  Araip.A250V 112 KWTGTMVRLLIMAVYYIGDEVGGGGgsgsgggssetssdpngkkkmmmnkqggglilqNKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVN 209
                  699999999999999777777765444556666777777778888888888888998899************************************** PP

     trihelix  66 egekkr.tsessstcpyfdqle 86 
                  +  ++  +++++++ ++++ ++
  Araip.A250V 210 DVLGRVtACKVVENQRLLETMD 231
                  *****9559*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.8E-18110257No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MESNNELGSG MFSVIGSSFL GLDHNNNPSQ QQQQNLQHRN QPTKMVQFGS SSSSSHHQQI  60
NYGNNNNSSK NKHQQGSLSD EDEQGLNNID VDESNSNKMK NISSISPWQR MKWTGTMVRL  120
LIMAVYYIGD EVGGGGGSGS GGGSSETSSD PNGKKKMMMN KQGGGLILQN KKGKWKSVSR  180
AMMEKGFYVS PQQCEDKFND LNKRYKRVND VLGRVTACKV VENQRLLETM DHLSPKAKEE  240
VRKLLNSKHL FFREMCAYHN SFGHGGGDAS QSQLQQEKEH EQGEKEKEER CFHSSSKLKI  300
GCEEEDHHAD SGDDDDDEDS EDYFDEDEDE LGEGGSKGLE KKQWLRSKIV KLEEKQISHE  360
GQGFEIEKQR MKWRKYSSKK EREMERAKFE NERRRLEIER MILIIHQKEL ELQHQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.A250V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184791.10.0trihelix transcription factor GTL1
TrEMBLA0A445E7691e-154A0A445E769_ARAHY; Uncharacterized protein
STRINGcassava4.1_007978m1e-118(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-61sequence-specific DNA binding transcription factors