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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.A17BX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 322aa MW: 37536.4 Da PI: 8.3828 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.8 | 1.3e-16 | 51 | 135 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+e k +++ +++t+++ +C a++ ++ k g w ++k++l+H+H+ Araip.A17BX 51 KFYRDYAKAAGFSTRVRSTNRK--ENEIKNQLITCSRERKWKSKIFP---TEKTNPTAGLNCPARIYIHTLKnVGAWIISKVVLHHSHPY 135 6****************98887..7779************9998877...8999**************998879**************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.8E-14 | 51 | 135 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDDLTSDCQL NQGEVDFEFE SNEVHEPLCV FDDQFVSKVG MTFTTLEDAG KFYRDYAKAA 60 GFSTRVRSTN RKENEIKNQL ITCSRERKWK SKIFPTEKTN PTAGLNCPAR IYIHTLKNVG 120 AWIISKVVLH HSHPYYPSKA EMLKQHRELS MSIRLCFWLY SAYLYEDHHI WVPIYLDHHF 180 WAGMRRTQRS ESMHSFFNKF ITRNSSLIQF VKQYDNCLGS REQAERESNA ADFHTVIPCT 240 TKSSIEVQFQ DVYTHQKFRE VQAQFRGRAN CITRLTNSAL GYSVYEVGEQ VSSSIFNKFV 300 VTYDSVAAER DIVPSHTKRV KL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.A17BX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A444YSY6 | 0.0 | A0A444YSY6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 6e-16 | far-red elongated hypocotyls 3 |