PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.9T9ZP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 49854.6 Da PI: 9.1185 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.9e-05 | 48 | 68 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F r nL+ H r H Araip.9T9ZP 48 CETCGKGFQRDQNLQLHRRGH 68 *******************88 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00033 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Araip.9T9ZP 122 WKCDKCSKRYAVQSDWKAHSKTC 144 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.4E-7 | 45 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-5 | 46 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.593 | 46 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 110 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.4E-7 | 117 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 452 aa Download sequence Send to blast |
MLILENMDHG ELSNGFPHHQ NQNPTTTPPP PSLKRKRNLP GNPGMFLCET CGKGFQRDQN 60 LQLHRRGHNL PWKLKQRTNK EPKKRVYVCP EKTCVHNHPS RALGDLTGIK KHFCRKHGEK 120 KWKCDKCSKR YAVQSDWKAH SKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEETARV 180 NAASSINNST LGANNNSNNI IGYNNMIGTS MAPHHNNNNN MATQFASICN KPIPFPEEAR 240 NNQTTTRGLS LWMDHHHHHR QEATMATNNN NYHLNWVFGS KISTNPSQDL SSDTTITSTT 300 TTSLPILGSI VSVPSLYSSQ HQPHQTCASS SSANMSATAL LQKAAQVGAT SSDPSSFLEA 360 LGLKCSNGSG QGQDGNNNKF CGVYGSSLVL TSSSNTINTE PENNELSQML PSKRRHVMPN 420 EESGGGQTRD FLGVGGANHH LPPFINQSLD LI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-36 | 118 | 187 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 7e-36 | 118 | 187 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.9T9ZP |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016165449.1 | 0.0 | zinc finger protein MAGPIE-like | ||||
Swissprot | Q9ZWA6 | 1e-122 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A444Y9C6 | 0.0 | A0A444Y9C6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G13810.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4626 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03840.2 | 1e-109 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|