PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9M2DD

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MIKC_MADS

Protein Properties

Length: 296aa MW: 33806.8 Da PI: 5.3789

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9M2DD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.4e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s Araip.9M2DD 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFS 58 79********************************************9997 PP
2	K-box	25.2	7e-10	92	160	9	77
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 + +++ e+lqqe+++L ++++ + ++R + + L+ s++eL++ e++L + l+++ ++K+ ll +++ Araip.9M2DD 92 VINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLVETLTRVMQRKEYLLSSHL 160 667899********************************************************9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.969	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.4E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.14E-26	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.47E-36	2	58	No hit	No description
PRINTS	PR00404	2.5E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.6E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.1E-7	96	160	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	7.199	97	198	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLNHFSGK 60 RRGIQNKEYL LRTLQQLRNE NDIALQLANP GVINSEIEEL QQEVSRLHQQ LQLAEDQIRA 120 YEPDPLKMTS MEELESGEKN LVETLTRVMQ RKEYLLSSHL PTYDPSTIQG MASTFENVGW 180 LQNGTQNHNQ IFDASTPLDP LRDLQSSIYD PFPQGTNSQS DTRNIGECHV TNQNDTWPQG 240 YTLYSHMQHE MVGPDVSNMM TTHGQMNLPI TASNLQPSNN EAGEYDCKPQ NQLNTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_R	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_S	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
6byy_A	1e-16	1	59	1	59	MEF2 CHIMERA
6byy_B	1e-16	1	59	1	59	MEF2 CHIMERA
6byy_C	1e-16	1	59	1	59	MEF2 CHIMERA
6byy_D	1e-16	1	59	1	59	MEF2 CHIMERA
6c9l_A	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_B	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_C	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_D	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_E	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_F	1e-16	1	59	1	59	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9M2DD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029150154.1	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-100	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A371E3B2	1e-159	A0A371E3B2_MUCPR; Agamous-like MADS-box protein (Fragment)
STRING	XP_004490359.1	1e-152	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8525	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-102	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]