PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.9K8N0

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Trihelix

Protein Properties

Length: 705aa MW: 77001 Da PI: 6.1318

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.9K8N0	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.7	4.3e-25	89	211	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......................................rergferspkqCkekwenlnkr 60 rW++qe+laL+++r++m+ ++r+++ k+plWeevs++ +e g++r++k+Ckek+en+ k+ Araip.9K8N0 89 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSSYSlisnvvyvyslsyasipsilalvnlgglilmnelirklAELGYKRNAKKCKEKFENVYKY 186 8*********************************************************************************************** PP trihelix 61 ykkikegekkrtsessstcpyfdqlea 87 +k++k+g++++++++ t+++fdqlea Araip.9K8N0 187 HKRTKDGRSGKSEGK--TYRFFDQLEA 211 *****975544..6*****85 PP
2	trihelix	106.2	2.2e-33	525	610	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m+++g++r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a Araip.9K8N0 525 RWPKAEVEALINLRTSLDAKYQENGPKGPLWEEISALMKKHGYNRNAKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 610 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	57	86	186	IPR001005	SANT/Myb domain
CDD	cd12203	2.59E-18	88	191	No hit	No description
PROSITE profile	PS50090	3.95	88	184	IPR017877	Myb-like domain
Pfam	PF13837	3.9E-8	160	212	No hit	No description
SMART	SM00717	4.6E-4	522	584	IPR001005	SANT/Myb domain
Pfam	PF13837	7.2E-23	524	611	No hit	No description
CDD	cd12203	6.92E-29	524	589	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.8E-5	524	581	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.317	524	582	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MLGDSAVLGT GGGSSGGADA VVATAATSSV AAAVATASAP LPPPLLSTAP HHHHDGAVEM 60 GGGGGGGGGG GGSTSGDDEK GERSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE 120 EVSSYSLISN VVYVYSLSYA SIPSILALVN LGGLILMNEL IRKLAELGYK RNAKKCKEKF 180 ENVYKYHKRT KDGRSGKSEG KTYRFFDQLE ALENNPIIHS PALPQKSALQ ATPVSMVKTT 240 ASLPSPPIIT TMPLPQQQLV VASSGTNTTS APPISIATVP SIAPATISMP QIQPNNSNNN 300 NSNNNNNNPV YFPPPPPPPA SSFPSIPAEL LSNSSSSSTS SEETIEGGSR RNKRKRRWKE 360 FFEKLMKEVI EKQEDLQKRF LEAIEKREKE RSAREEAWRV QELQRINKER EILAQERSIA 420 AAKDQAVMTF LHKIADQQNL PTPPFNNVSQ PSPPPPPPPP PPPPPQQTQP TPPVVVPPLP 480 TPPRPPPPPS MEMVKVVDNN NNNIGENNNN NNNNNSSPLA ASSSRWPKAE VEALINLRTS 540 LDAKYQENGP KGPLWEEISA LMKKHGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPQDSK 600 TCPYFHQLDA LYRERNSSKQ DAAPAIVTTT PLMVRPEQQW PPQTEQPSSQ PREVTMEDAR 660 KGGNEEDEDE EKDNIGDEDE DEDDDDDDEG GSNFEIVASK PVSAE

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MLGDSAVLGT GGGSSGGADA VVATAATSSV AAAVATASAP LPPPLLSTAP HHHHDGAVEM  60
GGGGGGGGGG GGSTSGDDEK GERSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE  120
EVSSYSLISN VVYVYSLSYA SIPSILALVN LGGLILMNEL IRKLAELGYK RNAKKCKEKF  180
ENVYKYHKRT KDGRSGKSEG KTYRFFDQLE ALENNPIIHS PALPQKSALQ ATPVSMVKTT  240
ASLPSPPIIT TMPLPQQQLV VASSGTNTTS APPISIATVP SIAPATISMP QIQPNNSNNN  300
NSNNNNNNPV YFPPPPPPPA SSFPSIPAEL LSNSSSSSTS SEETIEGGSR RNKRKRRWKE  360
FFEKLMKEVI EKQEDLQKRF LEAIEKREKE RSAREEAWRV QELQRINKER EILAQERSIA  420
AAKDQAVMTF LHKIADQQNL PTPPFNNVSQ PSPPPPPPPP PPPPPQQTQP TPPVVVPPLP  480
TPPRPPPPPS MEMVKVVDNN NNNIGENNNN NNNNNSSPLA ASSSRWPKAE VEALINLRTS  540
LDAKYQENGP KGPLWEEISA LMKKHGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPQDSK  600
TCPYFHQLDA LYRERNSSKQ DAAPAIVTTT PLMVRPEQQW PPQTEQPSSQ PREVTMEDAR  660
KGGNEEDEDE EKDNIGDEDE DEDDDDDDEG GSNFEIVASK PVSAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	177	KRNAKKCKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.9K8N0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025657035.1	0.0	trihelix transcription factor GT-2
TrEMBL	A0A445CYI4	0.0	A0A445CYI4_ARAHY; Uncharacterized protein
STRING	GLYMA16G28250.2	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-53	Trihelix family protein