PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9J5CM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 337aa    MW: 37324.4 Da    PI: 5.0129
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9J5CMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.31.8e-2741135186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWt+qe+l+Li+++++ e+r+r g+         + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ ++++
  Araip.9J5CM  41 RWTRQEILVLIQGKTDAETRFRPGRsavgspsigSPEPKWQLVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESRARDETESFWVMRNDMR 135
                  8*********************986677888888***************************************************9*****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.66734107IPR017877Myb-like domain
CDDcd122032.61E-1540114No hitNo description
PfamPF138372.9E-1341131No hitNo description
Gene3DG3DSA:1.10.10.607.1E-541106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVLEERVLFN GEHDGAVNGA QPVSAAPDGG DDGKPTARLP RWTRQEILVL IQGKTDAETR  60
FRPGRSAVGS PSIGSPEPKW QLVSSYCKKH GVNREPVQCR KRWSNLAGDY KKIKEWESRA  120
RDETESFWVM RNDMRRERKL PGYFDKEVYD ILDAAVSPAL AVIPASSATA AKVAEEVEGG  180
DDAEVHIYDS NRRVSVGGGG EDGLFSDSER DEVFVSGNKN VPHPVIPISA EKQYQPPLQG  240
EGNAQDATNE KQPASNPDST SQGERKRKRF SVDSEEETLQ SQLIDVLEKN GRMLRDQLEA  300
QNVNFQLDRQ QQKDTASNIV AVLDKLADAL GRIADKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9J5CM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194569.10.0trihelix transcription factor ASR3
RefseqXP_025650278.10.0trihelix transcription factor ASR3-like
RefseqXP_025697004.10.0trihelix transcription factor ASR3-like
SwissprotQ8VZ202e-96ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A444WNP70.0A0A444WNP7_ARAHY; Uncharacterized protein
TrEMBLA0A445DAK70.0A0A445DAK7_ARAHY; Uncharacterized protein
STRINGGLYMA18G51790.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-99Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]