PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.9EB8A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 449aa    MW: 49657.4 Da    PI: 8.3614
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.9EB8AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.9e-1077102126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C +f+rtG C yG +C+++H+
  Araip.9EB8A  77 PGEPDCLYFLRTGMCGYGTNCRYNHP 102
                  5789*********************8 PP
2zf-CCCH382.8e-12120145227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C +f++tGtCkyG++Ck++H++
  Araip.9EB8A 120 GQPDCEYFLKTGTCKYGSSCKYHHPR 145
                  5799********************96 PP
3zf-CCCH38.12.7e-12168190527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtG Ck+G  CkF+H+p
  Araip.9EB8A 168 SCPYYMRTGSCKFGVACKFHHPP 190
                  6********************97 PP
4zf-CCCH41.71.9e-13295320227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+++ tGtCkyG+ CkF+H++
  Araip.9EB8A 295 DQPECRYYMNTGTCKYGSDCKFHHPK 320
                  689*********************96 PP
5zf-CCCH35.81.4e-11337362126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++ +G+CkyG++CkF H+
  Araip.9EB8A 337 PGQAICSYYRIYGICKYGPTCKFDHP 362
                  5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-576103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.59176104IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-678102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-581103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-482102IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126118146IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10120145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6123147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5124145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6162191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901163191IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5165190IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10167190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4168189IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.605293321IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6299320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5334362IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582336364IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9338362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4341361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
KGVLRLIVET RRRRRNGSRK IVPLFQKPDM PENRQVLRNA ASNQSGDNIE EAIRRLKIND  60
NRDRDTAGQT SPYPDRPGEP DCLYFLRTGM CGYGTNCRYN HPANVSLGTH YGEELPERNG  120
QPDCEYFLKT GTCKYGSSCK YHHPRDRRGA APVSFNALGL PMRQEEKSCP YYMRTGSCKF  180
GVACKFHHPP HATFGASGVA ASPTSMIPTS GYVGGYPYSL PRMPYLSGQG LQSYVPPFFS  240
SPQGIIQGWN SYMGSMNPAM STGFLGSNLV YDSVNPGESL SGGQVVSLNL PDRPDQPECR  300
YYMNTGTCKY GSDCKFHHPK ERIAQSFINP LGLPVRPGQA ICSYYRIYGI CKYGPTCKFD  360
HPVLAISQNY RLATPTALSA LDTPLDGNRR GTFQPPETSP SKLSSDEHQH SDNNINNSQA  420
AEDSSKQADH TTSNSFEVAS ESSLHDQDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.9EB8A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166570.10.0zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_025666055.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A444YDZ00.0A0A444YDZ0_ARAHY; Uncharacterized protein
TrEMBLA0A445C4N00.0A0A445C4N0_ARAHY; Uncharacterized protein
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-112C3H family protein