PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.9B4G1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 523aa MW: 59799.8 Da PI: 8.9257 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.7 | 7.1e-17 | 61 | 147 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C ++ ++ k g w ++k++l+H+H+++p Araip.9B4G1 61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6***************998776..8889*************998877...8999**************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-14 | 61 | 147 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.186 | 310 | 346 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.9E-5 | 312 | 343 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.6E-4 | 321 | 348 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MDHSTSDSQL NPGEVDYEFE YNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG 60 KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPTR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKV EMLKQHRELS MSIRRTIENN EEADLYEDRH 180 IWVPIYLDHH FWAGMRSTQR SESMHSFFNK YITPNSSLIQ FVKQYDNCLG SREQAERESD 240 VADFHTVIPC ATKSSIEAQF QDAYTHAKFK EVQAQFRGKA NCITRLKNSA LGYSVYEVGE 300 QVSSSIFNKF VVTYDSVAAK VKCECLLFEL RGILCRHALS VLSFEQVSQV SPRYILERWS 360 KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FRSQNICEFA SESEELTAIL HRAYDNVMAE 420 MEALKAKRKG TSSLSHEDTN LESINELQRP PRIRTRGRPK NRLGSKLEKQ IANGTKKKKT 480 KVLSEINLFD AASAAHSNSS QYQGHVMNYQ FRVPAAGDNS LGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.9B4G1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445A850 | 0.0 | A0A445A850_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 4e-35 | far-red elongated hypocotyls 3 |