PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.989UZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 283aa MW: 30862.2 Da PI: 8.1355 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 172.1 | 2.8e-53 | 87 | 234 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae...skkel 100 C dCGn+akkdC+++RCR CCk rg+dC+thv+stWvpa krrer+ + + +aa++++ k+++ s ++++ s+t+++s + ++ Araip.989UZ 87 RVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVRSTWVPALKRRERHVAVTGVGGEAANKRT----KNNNGCASGSATSHSHTSTNSDScysHQDAR 180 47*********************************************7777666544444333....3333333333333333333332200022333 PP DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++slP +v+++avfrc rvs+v +ge+e+aY ++v+i+Ghvf+G+Lyd+G++ Araip.989UZ 181 FKESLPGHVRAPAVFRCHRVSTVGNGENEFAYLATVHISGHVFRGFLYDHGVDP 234 4456***********************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 4.7E-24 | 88 | 130 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 3.6E-52 | 88 | 233 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.2E-22 | 185 | 232 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MSMLGLTDLV FIAPNPSSLH HHRQQQLIST ENDNNNNPLS VGFGIFPLLA ATPCVQVVQN 60 QSNEEAMEDS GKKKKKIDED ENGGEFRVCT DCGNRAKKDC VYRRCRSCCK GRGYDCTTHV 120 RSTWVPALKR RERHVAVTGV GGEAANKRTK NNNGCASGSA TSHSHTSTNS DSCYSHQDAR 180 FKESLPGHVR APAVFRCHRV STVGNGENEF AYLATVHISG HVFRGFLYDH GVDPKNTIMP 240 SYASELQLGN NCISNGKNKE CSSSAIGVTT NEYDNLYSAS AAS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.989UZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182232.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A444XA96 | 0.0 | A0A444XA96_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G17885.1 | 6e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-45 | Lateral root primordium (LRP) protein-related |