PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.94GSC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 685aa    MW: 76678.5 Da    PI: 5.2764
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.94GSCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.58.9e-18277365188
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle.leHnHe 88 
                  +fY++YAk+ GF  r+s+s+k+   +  ++++fvC ++g+r+++  +  ++++r+raetr+gC a++ +++++ +g+w v   e l H H 
  Araip.94GSC 277 EFYQQYAKHHGFGARRSRSEKR--GEVRIRQEFVCHRQGYRSPKFYSmPNRQKRPRAETRCGCPARMLLRMDDeSGRWLVVYTEfLRHFHR 365
                  6****************98887..77789**************98886789999******************999***9877665788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-15277365IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.101447483IPR007527Zinc finger, SWIM-type
SuperFamilySSF577562.62E-5586621IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.7E-4596618IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MNVERQDGSS KHLSQNDLLA QVLGKEHPGR VRALGAGPCP TQVFGNAARQ PSGSAESNAE  60
DKRMIAELTA KLEKEWAKRQ SIHKVLFLPF PSPFPSVSIA PSSSPFPAVA IAPSSSSPPL  120
TQSHRGSKHT NSLTSDDDGY LRQLMASPSP SMERRVAGDE DTTRGVHVAD EPEMSDGAEH  180
GVGSFEGEGF AGMQSDEYDF QEDETEHDHH AEADVDNGDA VELEDSLDGA GGMSDNYAED  240
EFYAVDSVES IGWIDFLNLS EEDVFRFNFA DVDIAFEFYQ QYAKHHGFGA RRSRSEKRGE  300
VRIRQEFVCH RQGYRSPKFY SMPNRQKRPR AETRCGCPAR MLLRMDDESG RWLVVYTEFL  360
RHFHRCLMFV RAKEVEADFE CAKGDPVMTT NLKQLERSAA ENYTRAIFYL FVPILDRACA  420
MRVVDSEDNG SYFIHTVSRY GTPGKDWRVV ATSDTREVRC TCMRMECFGV LCEHIIAVLV  480
LNNVHEIPRS LILPRWTKDA KLVAVQSMGV IWDSVQLTQH WCLMDWYQKV CKIACHSTEK  540
FQFARDTAML MLKHFENEDA GDTSFPPEGP PTEGGRGPAQ NPPRRNTKGN GAHGGKKTQR  600
CRFCREVGHN RTTCPERRTM ESSSAVADDM DSMDTDMLYD NLSGDLYATA EIHSFQCFDS  660
DTQAGFANSD FAGTNTSGPV MSLAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.94GSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445DSZ40.0A0A445DSZ4_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-17FAR1-related sequence 5