PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.90YM8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 311aa    MW: 34325.3 Da    PI: 8.0589
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.90YM8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.49.7e-38101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++++++iswse+gn+fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell++ik
   Araip.90YM8  10 FLTKTYELVDDRATDDVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANEHFKRGQKELLSEIK 97 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
   Araip.90YM8  98 RRKSA 102
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.6E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.0E-39799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYELVDD RATDDVISWS ESGNTFVVWK HADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANEHFKRGQK ELLSEIKRRK SAHPAPPPSG TEKSGGDGNS  120
LLNSGGDDMG SSSTSSPDSK NPGSVETTTI TTTTTPPPHQ CANLSSENEK LKKDNETLNC  180
ELARAKQQCD ELVAFLRDCL KVCPDQINRI MRQGKCGSTR DPVQSDDTLV DDDDKQVGEA  240
AGPSTLKLFG VWLKEEKPNN NHKRGRQGPM GFDGPPAKEM KKTTTTTNSN SVVDFGGSNV  300
KVMMKSSKVC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2759925129Heat shock factor protein 1
5d5v_B5e-2759925129Heat shock factor protein 1
5d5v_D5e-2759925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.90YM8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963048e-87JN896304.1 Glycine max heat shock transcription factor HSFB1 mRNA, complete cds.
GenBankZ469538e-87Z46953.1 G.max mRNA for heat shock transcription factor 34.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201739.10.0heat shock factor protein HSF24
RefseqXP_025652695.10.0heat shock factor protein HSF24
SwissprotP223352e-93HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A444ZA681e-178A0A444ZA68_ARAHY; Uncharacterized protein
STRINGGLYMA01G39260.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-68heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]