PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8ZW4E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27863.6 Da    PI: 9.1009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8ZW4EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Araip.8ZW4E  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                 79***********************************************96 PP
2K-box85.89.1e-298816523100
        K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   Lk++ e+Lqr+qR+llGedL++L  k+L+qLe+qL++slk++Rs+K++++l+q+ +lq+ke+ l + n++L++kl+e
  Araip.8ZW4E  88 ELKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDE 165
                  69*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
CDDcd002656.25E-45276No hitNo description
SuperFamilySSF554556.8E-34278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.32879169IPR002487Transcription factor, K-box
PfamPF014865.1E-2488163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCSYGAVEV SKPAKELELK ARFESLQRTQ RNLLGEDLGP LGTKDLEQLE  120
RQLDSSLKQV RSTKTQFMLD QLTDLQNKEQ ILVDVNRTLS MKLDEINSRN QYRQQSWEAG  180
DQSMHQYAAP HNAHSSQGFF QPLECNPTLQ IGSDYRYNGV GSDQITATTT QAQQVSGFIP  240
GWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-337716315101Developmental protein SEPALLATA 3
4ox0_B6e-337716315101Developmental protein SEPALLATA 3
4ox0_C6e-337716315101Developmental protein SEPALLATA 3
4ox0_D6e-337716315101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8ZW4E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3907176e-81JX390717.1 Medicago polyceratia SEPALLATA1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194431.11e-180developmental protein SEPALLATA 1-like isoform X1
RefseqXP_025650094.11e-180developmental protein SEPALLATA 1 isoform X1
SwissprotQ8LLR21e-132MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A445DB481e-168A0A445DB48_ARAHY; Uncharacterized protein
STRINGXP_007139420.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]