PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.8X6BU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 223aa MW: 25325.3 Da PI: 8.2631 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6e-13 | 82 | 152 | 16 | 84 |
EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 16 lvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 + + + +++ +++ + ++l+ +d++ ++W++++iyr++++r++ t+ W+ Fv+ ++L +gD+v+F + Araip.8X6BU 82 IDIDPELLKKVkdysmQLP-A--QELVARDLHDNVWTFRHIYRGQPKRHLVTTEWSIFVSGKRLFAGDSVLFIR 152 6666666666666653333.3..48***********************************************74 PP | |||||||
2 | Auxin_resp | 35.7 | 3.6e-13 | 179 | 212 | 1 | 34 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekveka 34 aaha++++s+F+v+YnPr s+seFv++++k+ k Araip.8X6BU 179 AAHAFANNSPFTVFYNPRDSPSEFVIPLAKYYKV 212 79*****************************886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.3210.10 | 2.0E-16 | 6 | 73 | IPR006674 | HD domain |
Pfam | PF01966 | 5.2E-6 | 9 | 81 | IPR006674 | HD domain |
SuperFamily | SSF109604 | 9.87E-12 | 19 | 96 | No hit | No description |
CDD | cd00077 | 7.27E-5 | 20 | 88 | No hit | No description |
SMART | SM01019 | 0.0082 | 72 | 165 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 87 | 154 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.77E-19 | 88 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.04E-8 | 92 | 150 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-17 | 94 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 3.9E-9 | 179 | 211 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MITVQAIAYC TAQSVLEGPE LGIEHCDVMA GKLAGLLHDV GHGPFSHMFK GKFLFRVFNG 60 DKWSHEKMSA KMINYMVDEH NIDIDPELLK KVKDYSMQLP AQELVARDLH DNVWTFRHIY 120 RGQPKRHLVT TEWSIFVSGK RLFAGDSVLF IRLANRQLAN ISSSVLSSDS MHIGILAAAA 180 HAFANNSPFT VFYNPRDSPS EFVIPLAKYY KVVFLFSFLE FVR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-50 | 94 | 213 | 188 | 318 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.8X6BU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022929594.1 | 2e-58 | auxin response factor 19-like | ||||
Refseq | XP_023546642.1 | 3e-58 | auxin response factor 19-like | ||||
Swissprot | Q0D9R7 | 9e-53 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | A0A444YRL6 | 1e-118 | A0A444YRL6_ARAHY; Uncharacterized protein | ||||
STRING | XP_007152995.1 | 6e-55 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 4e-50 | auxin response factor 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|