PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.8L1R3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18916.1 Da PI: 10.5034 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.9 | 6.2e-24 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+n +nrqvt+skRrngi+KKA+ELSvLCda+v++ii Araip.8L1R3 10 LIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIIT 48 699**********************************95 PP | |||||||
2 | K-box | 44.2 | 8.1e-16 | 62 | 125 | 7 | 67 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRs 67 +l+++++e++ ++l+kLk+ +++L+r++R+++Ge d++++s ++L+ Le+++ +++ kiR Araip.8L1R3 62 IDLWHSHYEKMLENLKKLKDTNNKLRRQIRNRIGEgslDMDDMSSQQLRTLEEDMVSAIAKIRH 125 459********************************77779***********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-28 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.142 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-26 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-19 | 11 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.0E-10 | 66 | 125 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.663 | 69 | 163 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGRGKIEIKL IQNPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIITKK FIDQYRKTLG 60 DIDLWHSHYE KMLENLKKLK DTNNKLRRQI RNRIGEGSLD MDDMSSQQLR TLEEDMVSAI 120 AKIRHCQPPS RRHSFHPHLL CARREALSAA ATLLLITVYM CSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.8L1R3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020961209.1 | 1e-106 | floral homeotic protein DEFICIENS | ||||
Refseq | XP_029146158.1 | 1e-106 | floral homeotic protein DEFICIENS | ||||
Swissprot | Q003J2 | 3e-50 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A445AWC0 | 1e-104 | A0A445AWC0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G37470.1 | 1e-70 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 5e-34 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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